FC931093

Overview
NameFC931093
Unique NameFC931093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:50..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQLQKTNELLQNKPRRE 544
            EQ+R+LE  FE   +LEP +K+QLAK LGLQPRQ+AIWFQN+RARWK+KQLERDY+ L+  F+ L S  ++L    K+  A ++ L+K +     K +RE
Sbjct:  122 EQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKRE 221          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSMESELDNGDRDT 634
            EQ++ LE  FE E +LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A ++ LA+   AL  +   L  Q+    E LQ+K    + SPS          + +   E+D  D  T
Sbjct:   93 EQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDK----ETSPSSAT-------ITTAAQEVDQPDEHT 208          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSMESELDNGDRDT 634
            EQ++ LE  FE E +LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A ++ LA+   AL  +   L  Q+    E LQ+K    + SPS          + +   E+D  D  T
Sbjct:   93 EQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDK----ETSPSSAT-------ITTAAQEVDQPDEHT 208          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQL 502
            EQ+++LE  FE   +LEP +K+QLA+ LGLQPRQ+AIWFQN+RARWK+KQLE+DY+ L+  F+ L +  + L+   Q L  ++
Sbjct:   92 EQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEI 174          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQL---QKTNELLQ-NKPRREDQSPSERQCCGQVEGVNSMESELD 616
            EQ+R+LE  FE   +LEP +K+QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+DY+ L+   + + +  +AL    K+ QA ++ L   +  +EL+  NK        +E  C  + E  NS E  LD
Sbjct:  137 EQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNK-------ETEASCSNRSE--NSSEINLD 255          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQL---QKTNELLQ-NKPRREDQSPSERQCCGQVEGVNSMESELD 616
            EQ+R+LE  FE   +LEP +K+QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+DY+ L+   + + +  +AL    K+ QA ++ L   +  +EL+  NK        +E  C  + E  NS E  LD
Sbjct:  131 EQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNK-------ETEASCSNRSE--NSSEINLD 249          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRRE 544
            EQ+++LE  FE   +LEP +K+QLAK LG+QPRQ+AIWFQN+RARWK++QLERDY+ L+  F +L S   +L    + L+ ++      L+NK   E
Sbjct:   94 EQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVM----ALKNKECNE 186          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 39/83 (46.99%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQL 502
            EQ+R+LE  FE + +L+P +K ++A++L L PRQVA+WFQN+RARWK+KQ+ERD+  L++  + L    +AL+++K AL  ++
Sbjct:   72 EQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEI 154          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 39/83 (46.99%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQL 502
            EQ+R+LE  FE + +L+P +K ++A++L L PRQVA+WFQN+RARWK+KQ+ERD+  L++  + L    +AL+++K AL  ++
Sbjct:   48 EQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEI 130          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  254 EQIRSLELMFENETR-LEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSMES-ELDNGDR 628
            EQ+R+LE  FE E R LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A  + L +   AL  + ++L  Q+    E LQ   +    SP+  +         S +S +L+ G R
Sbjct:   89 EQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQANGKSPSPSPAPAEQTAVPAAPESAKSFQLEEGRR 215          
The following BLAST results are available for this feature:
BLAST of FC931093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HAT7_ARATH2.056e-2052.00Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]
HOX5_ORYSJ5.982e-2041.73Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI5.982e-2041.73Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
ATB13_ARATH2.969e-1951.81Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX21_ORYSJ3.877e-1945.31Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSI3.877e-1945.31Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
ATB20_ARATH1.128e-1848.45Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
HOX8_ORYSJ4.287e-1846.99Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI4.287e-1846.99Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX25_ORYSJ4.287e-1841.73Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34101D02EF PostHarvP1 Citrus clementina cDNA clone C34101D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931093 ID=FC931093; Name=FC931093; organism=Citrus clementina; type=EST; length=710bp
GATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAA
AAACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAA
AAATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGG
CGAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAA
CAACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAGGAGGTTCAGT
GATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACT
CGAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTC
GTCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAG
CAGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGC
TTCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGT
TGCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAG
AGTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCAT
GGAGAGCGAATTGGACAATGGAGACAGGGACACCAACAAGTGTGAATCAG
AAGTGAAGCCAAGCTTGTCAGCAGAACTGAAGCTAGGTGTTTTGTCAGAT
GATGATAGCA
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