FC931093

Overview
NameFC931093
Unique NameFC931093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:50..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  254 EQIRSLELMFENETR-LEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 559
            EQ+R+LE  FE E R LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A  + L +   AL  + ++L  Q+    E LQ   +    SP+
Sbjct:   29 EQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQVILLTEKLQANGKSPSPSPA 131          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL 469
            S EQ+R+LE  FE+  +LEP +K QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+D++ L+   +   +  +AL
Sbjct:  109 SVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL 469
            S EQ+R+LE  FE+  +LEP +K QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+D++ L+   +   +  +AL
Sbjct:  109 SVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVN-SMESELDNGDRDTNKCESEVKPSLSAELKLG 688
            EQ+++LE  FE   +LE  +KL+LA+ LGLQPRQ+AIWFQN+RAR K+KQLE+DY++L+        +FE+L+ E + L  Q QK    +     RE            +E +N + E+E    DR  N       P + ++  LG
Sbjct:   78 EQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLK-------RQFESLRDENEVLQTQNQKLQAQVMALKSRE-----------PIESINLNKETEGSCSDRSENISGDIRPPEIDSQFALG 205          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  257 QIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNEL 520
            Q+R LE  FE E RLEP +KL LA++LGLQP QVA+WFQN+RAR+K+KQLE D + L+A++  L + ++ L  + Q L  ++Q  N L
Sbjct:   76 QLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFLNRL 163          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  257 QIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 532
            Q+ SLE  F+ E +L+  +K++L++ELGLQPRQ+A+WFQN+RARWK+KQLE+ Y       ++L   ++ + +EKQ L  +++K   LL+++
Sbjct:   86 QLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLY-------DSLRQEYDVVSREKQMLHDEVKKLRALLRDQ 170          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 559
            +DEQ+  LE+ F +E +LE  +K +LA ELGL PRQVA+WFQN+RARWK+K+LE +YN L+ + +N+      L+ E   L  QL      +Q    R +   S
Sbjct:   61 TDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSS 164          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNN-------LASRFEALKKEKQALVIQLQKTNELLQNKPRREDQS 553
            +DEQ+  LE  F NE +LE  +K ++A ELGL PRQVA+WFQN+RARWK+K+LE +Y  L+ + +N       L S+   L ++      +++K +E L+  P     S
Sbjct:   76 TDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSS 184          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRR 541
            SDEQ+R LE+ FE++ +LE  +K +LA ELGL PRQVA+WFQN+RARWK+K++E +Y  L+  +         L  E   L  QL +    +Q   +R
Sbjct:   66 SDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKR 163          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQL--------AKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQ 568
            + EQ++ LE  F+ E +L P +K++L        +KELGLQPRQ+A+WFQN++ARWK+KQLE  Y        +L   F+ + +EK+ L  +L +   ++     RED S  ++Q
Sbjct:   76 TSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLY-------ESLRQEFDIVSREKELLQEELIQLKSMI-----REDSSCKKKQ 178          
The following BLAST results are available for this feature:
BLAST of FC931093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HOX25_ORYSI7.312e-1846.60Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX23_ORYSJ1.247e-1756.76Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI1.247e-1756.76Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB23_ARATH2.127e-1738.36Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
ATB54_ARATH4.740e-1751.14Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
ATB51_ARATH4.012e-1643.48Putative homeobox-leucine zipper protein ATHB-51 O... [more]
ATB40_ARATH4.012e-1643.27Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB53_ARATH1.167e-1540.37Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
ATB21_ARATH1.167e-1543.88Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB22_ARATH1.291e-1438.26Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC34101D02EF PostHarvP1 Citrus clementina cDNA clone C34101D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931093 ID=FC931093; Name=FC931093; organism=Citrus clementina; type=EST; length=710bp
GATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAA
AAACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAA
AAATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGG
CGAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAA
CAACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAGGAGGTTCAGT
GATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACT
CGAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTC
GTCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAG
CAGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGC
TTCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGT
TGCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAG
AGTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCAT
GGAGAGCGAATTGGACAATGGAGACAGGGACACCAACAAGTGTGAATCAG
AAGTGAAGCCAAGCTTGTCAGCAGAACTGAAGCTAGGTGTTTTGTCAGAT
GATGATAGCA
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