FC931093

Overview
NameFC931093
Unique NameFC931093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:50..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQ 430
            SDEQ+  LEL F  E +LE  +K+ LA ELGL P+QVA+WFQN+RAR KSK LE +++ L+
Sbjct:   67 SDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLK 127          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQ 430
            SDEQ+  LEL F  E +LE  +K+ LA ELGL P+QVA+WFQN+RAR KSK LE +++ L+
Sbjct:   67 SDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLK 127          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 523
            SDEQ R LE+ F+ E +LE  +K+QLA ELGL  +QVA+WFQN+RAR KSK +E +       F  L S  +A+  +   L  +L K  E L
Sbjct:   66 SDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEE-------FAKLRSAHDAVVLQNCHLETELLKLKERL 150          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 523
            SDEQ R LE+ F+ E +LE  +K+QLA ELGL  +QVA+WFQN+RAR KSK +E +       F  L S  +A+  +   L  +L K  E L
Sbjct:   66 SDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEE-------FAKLRSAHDAVVLQNCHLETELLKLKERL 150          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB52_ARATH (Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 523
            + +Q+R LE  F    +LEP  KLQL+ +LGL  RQVA+WFQNKRAR+K++ LE  +  LQ+      S    L+ + Q L  +L++    L
Sbjct:   16 TQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQL 107          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 48/129 (37.21%), Postives = 60/129 (46.51%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQN--KPRREDQSPSERQCCGQVEGVNSMESELDNGDR 628
            S +Q   LE  F     L PR+K  LA++LGL+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE Q L      +  L  N   P      PS    C +V   N+  S     DR
Sbjct:   87 SKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS----CERVSNTNNNSSAAAAADR 211          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 48/129 (37.21%), Postives = 60/129 (46.51%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQN--KPRREDQSPSERQCCGQVEGVNSMESELDNGDR 628
            S +Q   LE  F     L PR+K  LA++LGL+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE Q L      +  L  N   P      PS    C +V   N+  S     DR
Sbjct:   87 SKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS----CERVSNTNNNSSAAAAADR 211          
The following BLAST results are available for this feature:
BLAST of FC931093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HOX14_ORYSJ4.152e-1357.38Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI4.152e-1357.38Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ2.061e-1245.65Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI2.061e-1245.65Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
ATB52_ARATH1.336e-1141.30Homeobox-leucine zipper protein ATHB-52 OS=Arabido... [more]
HOX17_ORYSJ3.886e-1137.21Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI3.886e-1137.21Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34101D02EF PostHarvP1 Citrus clementina cDNA clone C34101D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931093 ID=FC931093; Name=FC931093; organism=Citrus clementina; type=EST; length=710bp
GATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAA
AAACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAA
AAATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGG
CGAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAA
CAACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAGGAGGTTCAGT
GATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACT
CGAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTC
GTCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAG
CAGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGC
TTCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGT
TGCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAG
AGTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCAT
GGAGAGCGAATTGGACAATGGAGACAGGGACACCAACAAGTGTGAATCAG
AAGTGAAGCCAAGCTTGTCAGCAGAACTGAAGCTAGGTGTTTTGTCAGAT
GATGATAGCA
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