FC931096

Overview
NameFC931096
Unique NameFC931096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10403 contig Ccv1_Contig10403:516..1231. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: CY24B_HUMAN (Cytochrome b-245 heavy chain OS=Homo sapiens GN=CYBB PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 42/144 (29.17%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 RTRRAYFYWVTREQGSFDWFKGVM----NEVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPDSRVGVFYCGAPALTKELRHLALDFSHK--TSTKFDFHKENF 414
            + ++ YFYW+ R+  +F+WF  ++    +++ E ++   +  + Y T  ++E  A    +       H     DV++G + K+ + +PNW N +K +A  HP++R+GVF CG  AL + L   ++  S        F F+KENF
Sbjct:  435 KLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTG-WDESQANHFAV-------HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 570          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: CY24B_MOUSE (Cytochrome b-245 heavy chain OS=Mus musculus GN=Cybb PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 RTRRAYFYWVTREQGSFDWFKGVMN----EVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPDSRVGVFYCGAPALTKELRHLALDFSHK--TSTKFDFHKENF 414
            + ++ YFYW+ R+  +F+WF  ++     ++ E ++ N +  + Y T  ++E  A    +       H     DV++G + K+ + +PNW N +K +A  HP++ +GVF CG  AL + L   ++  S        F F+KENF
Sbjct:  435 KLKKIYFYWLCRDTHAFEWFADLLQLLETQMQERNNANFLSYNIYLTG-WDESQANHFAV-------HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASEHPNTTIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 570          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: NOX5_HUMAN (NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   19 FYWVTREQGSFDWF-----KGVMNEVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 414
            F W+ R+Q SF+WF     K  M++  E  +   +ELH Y TS   + D ++  + M   L   K   D ++G + ++   +P+W  V+++VA      +V VF+CG+PAL K L+       H     F F +ENF
Sbjct:  636 FIWINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAA-EKKGKVQVFFCGSPALAKVLK------GHCEKFGFRFFQENF 765          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: NOXC_DICDI (Superoxide-generating NADPH oxidase heavy chain subunit C OS=Dictyostelium discoideum GN=noxC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 38/139 (27.34%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   10 RAYFYWVTREQGSFDWFKGVMNEVAELDHNNV--IELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPDSRVGVFYCGAPALTKELRHLALDFS--HKTSTKFDFHKENF 414
            + +F+W+ R+Q SF WF+ ++ +++   ++N+  I ++ + T V+ + D R  ++           G+D  +    K+H+ +PNW  +++  +  +    + VF CG   L+KEL      ++      TKF FHKENF
Sbjct: 1004 KVHFFWLNRDQHSFQWFEDLLIDISTNGNSNLPKISINTFNTRVFPKNDVRVFMLWNGLDKLFKAQGLDPTTNLPFKTHWGRPNWDTIFQYYSKKYSGESISVFCCGPSQLSKELYEKCRYYTCLKTGGTKFYFHKENF 1142          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: NOXB_DICDI (Superoxide-generating NADPH oxidase heavy chain subunit B OS=Dictyostelium discoideum GN=noxB PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 40/139 (28.78%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 RTRRAYFYWVTREQGSFDWFKGVMNEVAELDH-NNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 414
            +  + YF W++R++ SF WF  ++ E+   +  ++++E+H + T   E  D   A I   Q  +        ++    K+ F +PN+R+++ ++   H   ++GVFYCG  AL K +      F+ K +    FHKENF
Sbjct:  570 KINKIYFIWISRQKNSFQWFTDILAELENDERIDSILEIHIFLTGALELDDY--AKIKNAQKCH--------ITNLHSKTLFGRPNFRSIFNQLTQLHQREKIGVFYCGNKALGKNIIKNCNKFNGKNNCHLIFHKENF 698          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: DUOX2_RAT (Dual oxidase 2 OS=Rattus norvegicus GN=Duox2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 38/137 (27.74%), Postives = 66/137 (48.18%), Query Frame = 1
Query:    7 RRAYFYWVTREQGSFDWFKGVMNEVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHPD-SRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 414
            ++ YF WVTR Q  F+W   ++ EV E    +++ +H Y T + E+ D R+ ++ + +          + +G R  +HF +P +      +   HP   ++GVF CG P +TK +       + +    F  H ENF
Sbjct: 1381 KKIYFIWVTRTQRQFEWLADIIREVEENGSRDLVSVHIYITQLAEKFDLRTTMLYICERHFQKVLNRSLFTGLRSVTHFGRPPFELFLDSLQEVHPQVHKIGVFSCGPPGMTKNVEKACQLINRQDRAHFVHHYENF 1517          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: DUOX1_CAEEL (Dual oxidase 1 OS=Caenorhabditis elegans GN=bli-3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 34/137 (24.82%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 RTRRAYFYWVTREQGSFDWFKGVMNEVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKN-GVDVVSGTRVKSHFAKPNWRNVYKRVALNHPD-SRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHK 405
            R R+ YF WV     +++WF  V+  V +   + ++E H + T  + + D R+ ++ + +    A N G+ + +G   K+HF +PN++  ++ +   H + S++GVF CG   L + +     D + +       H+
Sbjct: 1357 RCRKVYFLWVCSTHKNYEWFVDVLKNVEDQARSGILETHIFVTQTFHKFDLRTTMLYICEKHFRATNSGISMFTGLHAKNHFGRPNFKAFFQFIQSEHKEQSKIGVFSCGPVNLNESIAEGCADANRQRDAPSFAHR 1493          
BLAST of FC931096 vs. ExPASy Swiss-Prot
Match: DUOX_DROME (Dual oxidase OS=Drosophila melanogaster GN=Duox PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 1
Query:    7 RRAYFYWVTREQGSFDWFKGVMNEVAELDHNNVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPNWRNVYKRVALNHP-DSRVGVFYCGAPALTKELRHLALDFSHKTS--TKFDFHKENF 414
            ++ YF W+      F+WF  V+ +V + D  NV+E+H + T  + + D R+ ++ + ++     +   + +G +  +HF +P+  +  K V   H   S++GVF CG   LTK +   A D  +KT     F  H ENF
Sbjct: 1337 KKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENHFQRLSKTSIFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCGPRPLTKSVMS-ACDEVNKTRKLPYFIHHFENF 1474          
The following BLAST results are available for this feature:
BLAST of FC931096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CY24B_HUMAN1.296e-1429.17Cytochrome b-245 heavy chain OS=Homo sapiens GN=CY... [more]
CY24B_MOUSE1.692e-1429.17Cytochrome b-245 heavy chain OS=Mus musculus GN=Cy... [more]
NOX5_HUMAN6.431e-1432.12NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=1 SV=1[more]
NOXC_DICDI1.433e-1327.34Superoxide-generating NADPH oxidase heavy chain su... [more]
NOXB_DICDI2.444e-1328.78Superoxide-generating NADPH oxidase heavy chain su... [more]
DUOX2_RAT5.444e-1327.74Dual oxidase 2 OS=Rattus norvegicus GN=Duox2 PE=2 ... [more]
DUOX1_CAEEL1.584e-1224.82Dual oxidase 1 OS=Caenorhabditis elegans GN=bli-3 ... [more]
DUOX_DROME2.069e-1229.50Dual oxidase OS=Drosophila melanogaster GN=Duox PE... [more]

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Properties
Property NameValue
Genbank descriptionC34101D05EF PostHarvP1 Citrus clementina cDNA clone C34101D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931096 ID=FC931096; Name=FC931096; organism=Citrus clementina; type=EST; length=715bp
AGGACAAGAAGAGCATACTTCTATTGGGTTACAAGAGAGCAAGGCTCGTT
CGATTGGTTTAAGGGAGTGATGAATGAGGTGGCTGAATTGGACCACAACA
ATGTCATAGAGCTTCACAATTACTGCACCAGTGTTTATGAAGAAGGTGAT
GCTCGCTCAGCTCTCATTGCCATGCTTCAGTCCCTCAATCACGCCAAGAA
TGGCGTTGACGTTGTCTCTGGAACACGCGTTAAGTCACATTTCGCCAAGC
CTAATTGGCGCAATGTGTACAAACGCGTTGCTCTCAATCACCCTGATTCT
AGAGTTGGTGTTTTCTATTGCGGGGCACCGGCACTGACAAAAGAGCTACG
ACACCTAGCTTTGGATTTCTCTCACAAGACAAGCACCAAGTTTGATTTCC
ATAAAGAAAACTTCTAGATCAAGTCCCTCCTGATTTCCACCATTATATAT
CATCTCTTCCACTCCGTTTTCTCGTACAAAGCCTGTGGCATGGCCCACTG
GCCCTTATGTTTATAGAAAAATCATATCAATATTTGTTTGGTACCCAGTT
GATTTTGCTGCAAAATCACTAATAGAGAGCATTAGAAATATCAAGCGGAC
AAAGGTTGGTGGGTAGTTGATATCAAGGCCACACCACACTGGACACACAA
CACATGGCAAGGGAGATATAGGCCGAAAAAGGGGTTTAGCAAAAAGTCAT
GCTCAGCCATTTCCT
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