FC931099

Overview
NameFC931099
Unique NameFC931099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:29..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.363e-52
Identity = 108/193 (55.96%), Postives = 132/193 (68.39%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKR 660
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV+G+++G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR
Sbjct:    1 MKLNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRLQRKR 188          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.217e-48
Identity = 106/202 (52.48%), Postives = 128/202 (63.37%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++   A+K  R
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAAR 199          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 92/194 (47.42%), Postives = 115/194 (59.28%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLQRK 657
            MK NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP    R+
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARR 191          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 91/194 (46.91%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLQRK 657
            M  NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP    R+
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARR 191          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 60/195 (30.77%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  130 EIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNL-SKEDDVRKYVNTYRRT---------FTTKSGKKVSKAPKIQRLVTPLTLQRKRGRIAEKKQ 684
            EI+   ++R  +DK+I  + +G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  +E +V  Y+    ++             +GK++ +  + +  +  + L+RKR    E+K+
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERKE 194          
The following BLAST results are available for this feature:
BLAST of FC931099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_KLULA7.363e-5255.9640S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_DICDI2.217e-4852.4840S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA4.190e-3947.4240S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN2.716e-3846.9140S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU1.549e-1730.7740S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34101D09EF PostHarvP1 Citrus clementina cDNA clone C34101D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931099 ID=FC931099; Name=FC931099; organism=Citrus clementina; type=EST; length=691bp
GAAACCTCAGAGAAGGAGTCGGAGTAGTACTAGAGCCGAAGCGCTTCTCA
TCTCTTTAGCCACAGACTCTATCGAACAAAGATGAAGTTCAATATCGCAA
ATCCCACCACTGGGTGCCAGAAGAAGCTCGAAATTGACGATGACCAGAAA
CTTCGAGCATTTTTTGACAAGAGGATCTCTCAAGAAGTCAATGGAGATGC
TCTTGGCGAGGAGTTCAAGGGATATGTGTTCAAGATTATGGGTGGCTGCG
ACAAGCAAGGTTTTCCCATGAAGCAAGGAGTGCTGACTCCCGGCCGTGTT
CGTCTTCTGCTCCACCGTGGTACCCCTTGCTTCCGTGGGTATGGCAGGAG
AGATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGATGCATAGTTAGTCCAG
ATCTCTCCGTGTTGAATTTGGTCATTGTGAAAAAGGGAGAACATGACCTT
CCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGTCCCAAGAGAGC
ATCGAAGATCAGGAAGTTGTTCAACCTTTCCAAGGAGGATGATGTTAGGA
AGTACGTTAACACCTATCGTAGGACCTTCACAACAAAATCTGGTAAGAAG
GTTAGCAAGGCACCGAAAATTCAGAGGTTGGTAACTCCTTTGACTCTGCA
AAGGAAGCGTGGCAGAATTGCAGAAAAGAAGCAGAGAATTG
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