FC931100

Overview
NameFC931100
Unique NameFC931100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.460e-34
Identity = 87/202 (43.07%), Postives = 128/202 (63.37%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 661
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E     +Q   + L P +    + L P   Q DT
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 88/202 (43.56%), Postives = 128/202 (63.37%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 661
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E      Q    Q+N       Y L P   Q DT
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDT 222          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 85/196 (43.37%), Postives = 122/196 (62.24%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGD 658
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E  L   N+ L+ ++ E  +   + L P +    Y L P Q   D
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPGSS--SYDLVPPQQSFD 215          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 80/169 (47.34%), Postives = 115/169 (68.05%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 574
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ ++ E
Sbjct:   23 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITE 188          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 83/187 (44.39%), Postives = 119/187 (63.64%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ-VNTLQLNPSAEDCGY 628
            +KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++FS+RG+LYE+ S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E  L   N  LK ++ E  + + T+ +  SA    Y
Sbjct:   50 IKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEY 234          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.109e-33
Identity = 84/165 (50.91%), Postives = 109/165 (66.06%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 565
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SSSS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L   NK L ++
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 87/210 (41.43%), Postives = 130/210 (61.90%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT---FFHALEC 682
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++   G   + +  N + E  G G + + P  +     F  L C
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKW--GSHESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLPC 210          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 80/184 (43.48%), Postives = 121/184 (65.76%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL--MEGYQVNTLQLNPSAE 616
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L+ ++  +E YQ +  Q+   +E
Sbjct:    8 IKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSE 189          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32
Identity = 77/163 (47.24%), Postives = 108/163 (66.26%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 559
            LKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L + N+ L+
Sbjct:    8 LKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLR 168          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.784e-32
Identity = 74/176 (42.05%), Postives = 117/176 (66.48%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN-----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ 583
            +KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++++  T++RY+K +      GAP   V+A++      QQE  KL+ + + LQ + ++L+G+ +  L+ KEL+ LE +L+  + +IR+ + + +   +  +  +E  L   N  L+ ++ E  Q
Sbjct:    8 IKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYY----QQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179          
The following BLAST results are available for this feature:
BLAST of FC931100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AG_SOLLC1.460e-3443.07Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_TOBAC1.907e-3443.56Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY1.907e-3443.37Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL5_ARATH5.549e-3447.34Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD58_ORYSJ7.248e-3444.39MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL14_ARATH2.109e-3350.91Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH2.754e-3341.43MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL11_ARATH6.136e-3343.48Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD56_ORYSJ5.194e-3247.24MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD13_ORYSJ6.784e-3242.05MADS-box transcription factor 13 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34101D10EF PostHarvP1 Citrus clementina cDNA clone C34101D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931100 ID=FC931100; Name=FC931100; organism=Citrus clementina; type=EST; length=712bp
GGAGATATATGAATATATAGTCATAGAAGAAGAAAGAAAGGAGAAGAAAA
TGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGG
CAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGA
GCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATA
GAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTT
GAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGC
AAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAG
CACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAA
CTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGA
TATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATA
CCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAG
ACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATT
GAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTC
AGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATT
GGATACCAGCCT
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