FC931104

Overview
NameFC931104
Unique NameFC931104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 87/231 (37.66%), Postives = 129/231 (55.84%), Query Frame = 1
Query:   13 LEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIG 705
            +E G  Y GA++  +  I+F+G  EL MT+ +LPVFYKQR   FYP+WAF+LP  ++  PLS ++  I +++TY+TIG+      F K YL       M+  L+R IAA+ R  V++N +G                ++ +  +L W Y+ SPMMY QT++ V+EF    W          +  LG A+LK RGF+ ++YWYWIG+ ALI  + L N +    L +L   G
Sbjct:  545 VEDGIIYMGAIYLEVQMIVFSGFFELPMTIDKLPVFYKQRHFSFYPSWAFSLPTSIITFPLSFVEVFIVVLITYFTIGYDLTVPSFLKHYLVLALCGQMSYGLFRCIAAVTRNHVVSNTMGCLAVMWLMTFSGYVLSRNQVHKWLTWAYWTSPMMYIQTAVSVNEFRSESW----------KDGLGVAVLKSRGFFVETYWYWIGLLALILSTILSNIITSLCLAFLKQYG 765          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 57/235 (24.26%), Postives = 102/235 (43.40%), Query Frame = 1
Query:   22 GNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEF------LDGRWDVP--------------SGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNF 666
            GN   G +FFSLL I+F+GM  +++   +  VFY Q+D  +Y  +AF L +    IP+++L++ ++ VL Y+  G    A +F    L  F         ++ ++A      + + +                 K  I  +  W Y++SP+ Y    ++ +E        D    +P              SG+ SI + T G   L + G   ++++ WI +  +  F  LF+F
Sbjct:  422 GNNRSGLIFFSLLFIVFSGMGAIAILFEQREVFYIQKDGKYYKTFAFFLSLIFSEIPIALLETVVFCVLVYWMCGLQANAEKFIYFLLMNFVGDLAFQSFFKMVSAFAPNATLASVIAPAALAPFILFSGFMAPKRSIGGWWIWIYWISPIKYAFEGLMSNEHHGLIYSCDDSETIPPRNTPNFELPYPRGSGNSSICQITRGDQFLDQLGMPQNNWFKWIDLLIVFAFGALFSF 656          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 53/244 (21.72%), Postives = 102/244 (41.80%), Query Frame = 1
Query:   22 GNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEF--------------------LDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYL 693
            G+   G LFFSLL  +F G   +S+   +  VFY +R   +Y    + L + V  +P+SI++  I+    Y+  G      RF   +L       M+L + R + +  +T+   +A+                  ++I  +  W Y++SP+ YG   +L++E                      +  + V      +   T G+ +L   GF+ + Y+ W+ +  +  F+ LF  + +  + +L
Sbjct:  479 GSNRSGLLFFSLLTFVFGGFGSISVFFDQRQVFYSERAWKYYNTITYFLSMIVTDLPMSIVEVLIFSNFVYWMTGLNKTWDRFIYFFLTCLVCDVMSLSIIRSVCSFTKTKYAASAISPAVVSPFILMCGYMKHSNEIPGWWIWLYWISPIHYGFEGLLLNEHSGLDYHCSPDELMPPSFLPTFNTSYPVGFEGNQVCPITKGEQILDSIGFHTEFYYRWVDLAIISAFTLLFWLITLVCMKFL 722          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 57/245 (23.27%), Postives = 97/245 (39.59%), Query Frame = 1
Query:   19 GGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPS-------------------GDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 696
            GG + FG LFF ++ I+F+  A ++       VFY Q+   +Y   A+ +   +  IP  IL+   +  + Y+     P   RF    L      N++L   +  AAI  T  I N + +               K+DI  +  W YY+SP  +    + ++EF    +   +                   G   + + T G+ ++   G  N +Y+ W+  G L  +   F  +   AL Y N
Sbjct:  514 GGMERFGLLFFIMVTIIFSSFAAVNSFFGERKVFYSQKALYYYKTGAYFISSIICDIPAGILEVAFFGPIVYWLANLRPVFIRFVYFMLLLIMTDNLSLSFAKMCAAISPTIEIANVIASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEFTYQEYGCKTSELIPPRTPQNLLPYPEGFGGNQVCQFTSGEQIMDAFGITNPNYFKWVVFGILSAYIVFFYVVCFFALKYFN 758          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 58/245 (23.67%), Postives = 95/245 (38.78%), Query Frame = 1
Query:   19 GGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFL-------DGRWDVPS------------GDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLN 696
            GG + FG LFF +  I+F+  A ++       VFY Q+   +Y   A+ +   +  IP  +++   +  + Y+     P   RF    +  F   N++L   +  AAI  T  I N   +               K+DI  +  W YY+SP  +    + ++EF        D     P             G   + + T G+ ++   G  N  Y+ WI    L  +   F  +   AL YLN
Sbjct:  505 GGMERFGLLFFIMTTIIFSSFAAVNSFFGERKVFYSQKALHYYKTGAYFISSIICDIPAGLIEVAFFGPIVYWLANLRPVFIRFVYFMILLFITDNLSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEFTYQAYGCKDSELIPPRTPQNLLPYPEGFGGNQVCQYTSGEQIMDAFGINNPDYFKWIVYAILGAYIVFFYSVCFFALKYLN 749          
The following BLAST results are available for this feature:
BLAST of FC931104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AB38G_ARATH2.837e-4137.66ABC transporter G family member 38 OS=Arabidopsis ... [more]
ABCG2_DICDI2.047e-1524.26ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCGI_DICDI1.733e-1421.72ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG6_DICDI1.733e-1423.27ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG5_DICDI5.576e-1323.67ABC transporter G family member 5 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC34101E02EF PostHarvP1 Citrus clementina cDNA clone C34101E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931104 ID=FC931104; Name=FC931104; organism=Citrus clementina; type=EST; length=724bp
TCAGTGGGAGATCTGGAAGGTGGCAATAAGTATTTCGGAGCACTGTTTTT
CAGTCTGCTTAATATTATGTTTAACGGGATGGCAGAACTTTCAATGACTG
TTTTGAGGCTACCTGTATTTTATAAACAAAGGGATCACTTATTCTATCCT
GCGTGGGCTTTTGCCTTACCTATATGGGTTCTCCGGATCCCATTATCAAT
CCTGGATTCAACAATATGGATCGTTCTGACCTACTACACAATAGGTTTTG
CTCCAGCAGCAAGCAGGTTCTTCAAACAATACTTGGCATACTTTTGTATA
CACAATATGGCTCTGCCCCTTTACCGGTTCATTGCTGCTATTGGAAGAAC
TGAGGTTATTACAAACGCACTGGGTACTTTCGCCTTGTTACTCATTTTTT
CACTCGGAGGATTCATCATTGCCAAAGATGACATTGAGCCATTCCTGGAA
TGGGGCTACTATGTTTCGCCTATGATGTATGGACAGACTTCCATACTTGT
AGATGAATTCCTTGATGGAAGATGGGATGTGCCCAGTGGAGACCGCAGCA
TTAATGAACGTACACTTGGGAAAGCACTTCTCAAGAGGAGAGGCTTCTAC
AATGACAGTTACTGGTATTGGATTGGCATCGGAGCACTGATTGGATTTTC
TTTTCTCTTCAACTTTTTGTTTATTGCAGCATTGACTTACTTGAATCCTA
TCGGTGAATTCAACTCAACTGTCG
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