FC931133

Overview
NameFC931133
Unique NameFC931133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.203e-21
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3
Query:  159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT 281
            F +     HKSDG+TIEWLL+QAEP++IAATGTGT PA+F+
Sbjct:   64 FQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS 104          

HSP 2 Score: 60.4622 bits (145), Expect = 4.203e-21
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   67 VPKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            V K+   KDRH+KV+GRGRRIRMP  CAARVFQLT+EL
Sbjct:   33 VVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTREL 70          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.475e-21
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3
Query:  159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT 281
            F +     HKSDG+TIEWLL+QAEP++IAATGTGT PA+F+
Sbjct:   56 FQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS 96          

HSP 2 Score: 60.077 bits (144), Expect = 5.475e-21
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            K+  +KDRH+KV+GRGRRIRMP  CAARVFQLT+EL
Sbjct:   27 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTREL 62          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.086e-17
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3
Query:  159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIP 269
            F +     H++DGETIEWLL+QAEP++IAATGTG  P
Sbjct:   81 FQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTP 117          

HSP 2 Score: 53.9138 bits (128), Expect = 7.086e-17
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            K  S+ DRH+KV GRGRR+R+PA  AARVFQLT+EL
Sbjct:   52 KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTREL 87          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.268e-15
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   85 TKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            TKDRHTKV GR RR+ MPA  AAR+FQLT+EL
Sbjct:   43 TKDRHTKVNGRSRRVTMPALAAARIFQLTREL 74          

HSP 2 Score: 50.447 bits (119), Expect = 1.268e-15
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGT 263
            F +     HK++GETIEWLL QAEP++IAATG GT
Sbjct:   68 FQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.120e-15
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            K+   KDRH KVEGRGRR+R+P  CAAR++QLT+EL
Sbjct:   64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKEL 99          

HSP 2 Score: 46.2098 bits (108), Expect = 2.120e-15
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3
Query:  183 HKSDGETIEWLLQQAEPAVIAATGTGTIP 269
            HKSDGET+EWLLQ AEP++++AT  G  P
Sbjct:  101 HKSDGETLEWLLQHAEPSILSATVNGIKP 129          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   70 PKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            PKR+S KDRHTKVEGRGRRIRMPA CAAR+FQLT+EL
Sbjct:   73 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTREL 109          
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP16_ARATH (Transcription factor TCP16 OS=Arabidopsis thaliana GN=TCP16 PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.456e-11
Identity = 34/131 (25.95%), Postives = 54/131 (41.22%), Query Frame = 3
Query:  159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTXXXXXXXXXXXXXXATHLRNTYFN---PNFGSQQLMRNMRSEWERTLIDNNCNSLSFPLTGGNVNAMLQSNKQELRDNNTIATTTTSLDV 542
            F +      K+DGET+ WLLQ AEPA+ AATG G    +                  ++ N  F     N G +Q++      +  + + ++  S ++     N N+    N     D  + ATTT +  V
Sbjct:   42 FRLTKELGFKTDGETVSWLLQNAEPAIFAATGHGVTTTSNEDIQPNRNFPSYTFNGDNISNNVFPCTVVNTGHRQMV------FPVSTMTDHAPSTNYSTISDNYNSTFNGN-ATASDTTSAATTTATTTV 165          

HSP 2 Score: 43.1282 bits (100), Expect = 3.456e-11
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   76 RTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180
            R + KDRH K+ GR RRIR+P + A ++F+LT+EL
Sbjct:   14 RRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKEL 48          
The following BLAST results are available for this feature:
BLAST of FC931133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP7_ARATH4.203e-2165.85Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP21_ARATH5.475e-2165.85Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
PCF1_ORYSJ7.086e-1762.16Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP11_ARATH1.268e-1575.00Transcription factor TCP11 OS=Arabidopsis thaliana... [more]
TCP6_ARATH2.120e-1566.67Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
TCP20_ARATH9.645e-1286.49Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP16_ARATH3.456e-1125.95Transcription factor TCP16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34101G12EF PostHarvP1 Citrus clementina cDNA clone C34101G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931133 ID=FC931133; Name=FC931133; organism=Citrus clementina; type=EST; length=687bp
AACGTCAACGAACAAAGCTCAAAAGGCTTCTCTGAGTCATCCGCAGCAGC
GGCAGCAAAGAAACCTGTTCCGAAAAGAACATCAACAAAAGACAGGCACA
CGAAAGTTGAAGGGCGCGGCCGCCGGATCCGCATGCCAGCAGCTTGTGCA
GCTAGGGTTTTTCAGTTGACTCAAGAACTCGTCACAAATCTGACGGTGAA
ACCATAGAATGGTTGCTTCAACAAGCCGAGCCAGCTGTCATTGCCGCCAC
TGGCACAGGTACTATCCCTGCCAATTTCACGTCACTTAATATATCTCTTA
GGAGCTCAGGCTCAAGTATGTCGGCTACTCATTTGAGGAACACTTATTTC
AATCCAAATTTCGGTTCCCAACAATTGATGAGAAATATGAGAAGTGAATG
GGAGAGAACTCTAATTGATAATAACTGCAACTCATTGAGCTTTCCTTTAA
CTGGTGGTAATGTGAATGCTATGTTACAAAGTAATAAGCAAGAGTTACGT
GATAATAATACGATAGCTACTACTACAACGAGCTTAGATGTGTCTGAGGC
GGATACTGGTATGGGGAGAAAGCGAAGGCCAGACCAAGAATTGTCACAAA
ATAATCAGATGGGGAGTTACCTGGTTCAATCCAGCACCGGCTCTATTCCG
GCCAGTCACAGCACGATTCCGGCGACATTTTGGATGA
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