FC931133
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.203e-21 Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT 281 F + HKSDG+TIEWLL+QAEP++IAATGTGT PA+F+ Sbjct: 64 FQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS 104 HSP 2 Score: 60.4622 bits (145), Expect = 4.203e-21 Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 67 VPKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 V K+ KDRH+KV+GRGRRIRMP CAARVFQLT+EL Sbjct: 33 VVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTREL 70
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 5.475e-21 Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT 281 F + HKSDG+TIEWLL+QAEP++IAATGTGT PA+F+ Sbjct: 56 FQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS 96 HSP 2 Score: 60.077 bits (144), Expect = 5.475e-21 Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 Query: 73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 K+ +KDRH+KV+GRGRRIRMP CAARVFQLT+EL Sbjct: 27 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTREL 62
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 7.086e-17 Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3 Query: 159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIP 269 F + H++DGETIEWLL+QAEP++IAATGTG P Sbjct: 81 FQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTP 117 HSP 2 Score: 53.9138 bits (128), Expect = 7.086e-17 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 K S+ DRH+KV GRGRR+R+PA AARVFQLT+EL Sbjct: 52 KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTREL 87
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.268e-15 Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 Query: 85 TKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 TKDRHTKV GR RR+ MPA AAR+FQLT+EL Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTREL 74 HSP 2 Score: 50.447 bits (119), Expect = 1.268e-15 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 3 Query: 159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGT 263 F + HK++GETIEWLL QAEP++IAATG GT Sbjct: 68 FQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 2.120e-15 Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 73 KRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 K+ KDRH KVEGRGRR+R+P CAAR++QLT+EL Sbjct: 64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKEL 99 HSP 2 Score: 46.2098 bits (108), Expect = 2.120e-15 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3 Query: 183 HKSDGETIEWLLQQAEPAVIAATGTGTIP 269 HKSDGET+EWLLQ AEP++++AT G P Sbjct: 101 HKSDGETLEWLLQHAEPSILSATVNGIKP 129
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 70 PKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 PKR+S KDRHTKVEGRGRRIRMPA CAAR+FQLT+EL Sbjct: 73 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTREL 109
BLAST of FC931133 vs. ExPASy Swiss-Prot
Match: TCP16_ARATH (Transcription factor TCP16 OS=Arabidopsis thaliana GN=TCP16 PE=2 SV=1) HSP 1 Score: 45.8246 bits (107), Expect = 3.456e-11 Identity = 34/131 (25.95%), Postives = 54/131 (41.22%), Query Frame = 3 Query: 159 FSVDSRTRHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTXXXXXXXXXXXXXXATHLRNTYFN---PNFGSQQLMRNMRSEWERTLIDNNCNSLSFPLTGGNVNAMLQSNKQELRDNNTIATTTTSLDV 542 F + K+DGET+ WLLQ AEPA+ AATG G + ++ N F N G +Q++ + + + ++ S ++ N N+ N D + ATTT + V Sbjct: 42 FRLTKELGFKTDGETVSWLLQNAEPAIFAATGHGVTTTSNEDIQPNRNFPSYTFNGDNISNNVFPCTVVNTGHRQMV------FPVSTMTDHAPSTNYSTISDNYNSTFNGN-ATASDTTSAATTTATTTV 165 HSP 2 Score: 43.1282 bits (100), Expect = 3.456e-11 Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1 Query: 76 RTSTKDRHTKVEGRGRRIRMPAACAARVFQLTQEL 180 R + KDRH K+ GR RRIR+P + A ++F+LT+EL Sbjct: 14 RRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKEL 48 The following BLAST results are available for this feature:
BLAST of FC931133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931133 ID=FC931133; Name=FC931133; organism=Citrus clementina; type=EST; length=687bpback to top |