FC931140

Overview
NameFC931140
Unique NameFC931140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:92..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QOR_ECOLI (Quinone oxidoreductase OS=Escherichia coli (strain K12) GN=qor PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 79/224 (35.27%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   45 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDG 713
            G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP   S   G E +G +  VG  V   K GD+V  A    G Y+    + A +   +P+ +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G+ +K       GA   INY+ ED V R+KE TGGK V V+ D +G   ++R+LD L   G
Sbjct:   11 GGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGL-GTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRG 233          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QOR_SALTY (Quinone oxidoreductase OS=Salmonella typhimurium GN=qor PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 80/224 (35.71%), Postives = 111/224 (49.55%), Query Frame = 3
Query:   45 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDG 713
            G PEVLQ  E    +  + E+ ++ +A  +N  DT  R G YPPP   +   G E +G +  VG  V   +VGD+V  A    G Y+    V A +   +P  +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T GS +K     D GA   INY+ E  V RVKE TGGK V V+ D +G   ++ +LD L   G
Sbjct:   11 GGPEVLQTVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPPPSLPAGL-GTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALDAGAWQVINYREESIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRG 233          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QOR_YEAST (Probable quinone oxidoreductase OS=Saccharomyces cerevisiae GN=ZTA1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 75/236 (31.78%), Postives = 127/236 (53.81%), Query Frame = 3
Query:   21 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDG 713
            K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   PY  G E SGT+++ GK V+ ++VGDQV A +    +A+   + + G V+ +P G S ++   +      V + +  T+   H+  G+  L+   + G+G    Q+ K +G      A ++EKL + K+ GA+  IN   ED + +V + T GKGVD   D +G   F+ +L +L   G
Sbjct:   10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYVLGREASGTVVAKGKGVTNFEVGDQV-AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKG 241          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QOR_PSEAE (Quinone oxidoreductase OS=Pseudomonas aeruginosa GN=qor PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 78/234 (33.33%), Postives = 115/234 (49.15%), Query Frame = 3
Query:   21 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            K I     G PEVL+ ++ +  +    EV ++  A  LN  DT  R G YP P G     G E +G + +VG  V+R+KVGD+V    G  G Y+E   +   +++ +P G+  + AAA      T    +  T  L  GE+ L H  + G+G FA Q  K  GV++  T  S EK  + +  GA   I+Y  E+   RV E T GK   V+ D +G   ++ +LD +   G L
Sbjct:    3 KRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAP-GLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLL 235          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: VAT1L_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Mus musculus GN=Vat1l PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 71/217 (32.72%), Postives = 114/217 (52.53%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCM 665
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T ++ +F  ++L  G S LVH    G+G    Q+      V VF TA + +  A+ KD  +   +  +  D+V  VK     +GVD++LDC+
Sbjct:   40 MRAVVLAGFGGLNKLRLSRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI-KD--SVTHLFDRNADYVQEVK-RISAEGVDIVLDCL 252          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 74/237 (31.22%), Postives = 125/237 (52.74%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            ++ +V+T  G  + ++LQ      P     ++ +++ A  LN AD + R+G Y         PG+E +G +++VG+ VS  K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA S  K    K+ G    I+Y T D+V  +K +   KGVD+++D +G S   +  + L   G++
Sbjct:   48 LRCLVLTGFGGYDKVKLQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTA-SASKHEALKENGVTHPIDYHTTDYVDEIK-KISPKGVDIVMDPLGGSDTAKGYNLLKPMGKV 282          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 73/222 (32.88%), Postives = 119/222 (53.60%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGAS 674
            ++ +V+T  G  + ++LQ      P     ++ ++V A  LN AD + R+G Y         PG+E +G +++VG+ V   K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA S  K  V K+ G    I+Y T D+V  +K +   KGVD+++D +G S
Sbjct:   61 LRCLVLTGFGGYDKVKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTPGMEGAGVVVAVGEGVGDRKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTA-SASKHEVLKENGVTHPIDYHTTDYVDEIK-KISPKGVDIVMDPLGGS 280          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: VAT1L_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCM 665
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T +  +F  ++L  G S LVH    G+G    Q+      V VF TA + +  A+ KD  +   +  +  D+V  VK     +GVD++LDC+
Sbjct:   42 MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI-KD--SVTHLFDRNADYVQEVK-RISAEGVDIVLDCL 254          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTU (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 61/228 (26.75%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   33 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGR 716
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +   + ++ +F  +++ +T G+GVDV+L+ +  +     L  L   GR
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGAAQLAGLKLLAFRGR 1659          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 61/228 (26.75%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   33 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGR 716
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +   + ++ +F  +++ +T G+GVDV+L+ +  +     L  L   GR
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLNSVTGAAQLAGLKLLAFRGR 1659          
The following BLAST results are available for this feature:
BLAST of FC931140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
QOR_ECOLI2.109e-2835.27Quinone oxidoreductase OS=Escherichia coli (strain... [more]
QOR_SALTY6.136e-2835.71Quinone oxidoreductase OS=Salmonella typhimurium G... [more]
QOR_YEAST1.974e-2631.78Probable quinone oxidoreductase OS=Saccharomyces c... [more]
QOR_PSEAE5.743e-2633.33Quinone oxidoreductase OS=Pseudomonas aeruginosa G... [more]
VAT1L_MOUSE3.151e-2432.72Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
VAT1_HUMAN4.116e-2431.22Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
VAT1_MOUSE7.021e-2432.88Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
VAT1L_HUMAN1.198e-2332.72Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
PHAS_MYCTU2.043e-2326.75Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCTA2.043e-2326.75Phthioceranic/hydroxyphthioceranic acid synthase O... [more]

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Properties
Property NameValue
Genbank descriptionC34101H08EF PostHarvP1 Citrus clementina cDNA clone C34101H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931140 ID=FC931140; Name=FC931140; organism=Citrus clementina; type=EST; length=726bp
GGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGACGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTTACCCG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCTTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAGTGAGGAAAAGCTGGC
TGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCAATTACAAGACTGAGG
ATTTTGTTGCACGAGTGAAGGAAGAAACTGGTGGTAAAGGTGTTGATGTA
ATTCTAGATTGCATGGGAGCATCCTACTTTCAGCGTAACCTCGACAGCTT
GAACATTGATGGGAGGCTTTTCATAA
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