FC931140

Overview
NameFC931140
Unique NameFC931140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:92..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 77/248 (31.05%), Postives = 112/248 (45.16%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASY 677
            MKA V+ Q   P  LQ++EVE P+I   EVL++++A  +   D     G +P        PG E  G I  VG  V+  KVGD+V        C      L G                GGYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+G  A+Q  K  G+ V      +EKL + K LGAD+ +N K +D    +KE+ GG    V+     A++
Sbjct:    1 MKAAVVEQFKKP--LQVKEVEKPKISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVDLGDEKLELAKQLGADLVVNPKHDDAAQWIKEKVGGVHATVVTAVSKAAF 244          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 75/229 (32.75%), Postives = 110/229 (48.03%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-YPGLECSGTILSVGKNVSRWKVGDQVCALLGG---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMG 668
            MKA V +  G  +VL+L+  +  P+IK+D+VLIKV A ALN  D  +R+G +       P  PG + +G ++ VG  V   K GD+V A +           G  AE  AV    +   P  +    AA  P +A        + +  S G+S LV  G+ G+G+  IQ+ K   G        S EKL + + LGAD+ I+Y  E+      E+   K  DV+ D +G
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLP-LAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENI-----EDLPDK-YDVVFDAIG 299          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 73/241 (30.29%), Postives = 117/241 (48.55%), Query Frame = 3
Query:   15 TMKAIVITQ--PGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGRLFI 725
            TM+ +V+T+  P   E + L+ +   P   D ++L++     +N +D     G Y P        G E  G ++++G + S R+ VG Q  A +  G +AE   VPA   +P+PS     +         T + ++     LS G+  LV   + G G FA+Q+ K     V  T  S+EK A  K +G D  INY+TE     +K+E   +GVDV+ + +G + F   +D+L   GRL +
Sbjct:   32 TMQKLVVTRLSPNFHEAVTLRRDCPVPLPGDGDLLVRNRFVGINASDINYSAGRYDPSLKPPFDIGFEGIGEVVALGLSASARYTVG-QAVAYMAPGSFAEYTVVPASIAIPMPS--VKPEYLTMLVSGTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFLKSIGCDRPINYRTEPVETVLKQEY-PEGVDVVYESVGGAMFDLAVDALATKGRLIV 268          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS14_DICDI (Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 70/228 (30.70%), Postives = 117/228 (51.32%), Query Frame = 3
Query:   90 IKDDEVLIKVEATALNRADTLQRKGSYPPPKGA------SPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL--SPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAGSEEKLAVCKDLGADVCIN-YKT------EDFVARVKEETGGK-GVDVILDCMGASYFQRNLDSLNIDGRL 719
            +K++++ + V+AT +N  D L   G  PP   +       P  GLE SG + ++G N++ +K+GDQ+   +G    +  + V   Q+   P+ ++  +AA+ P V  T + ++F   +L     ES L+H GS GIG  A+ + K +G +  +FVT GS+EK     +   D     Y T      E+   ++K+    K GVD+IL+ + + Y   N   LNI GR+
Sbjct: 1855 LKENQLEVHVKATGINYKDYLLYCGLLPPEMVSHNNDINDPEFGLEFSGIVSAIGSNINDFKIGDQIYG-IGYDTTSTHIIVDYNQIYHKPTNINHIEAASIPGVYLTSYHSIFNVGNLKIKRNESILIHSGSGGIGLSALNILKWKGHKSHIFVTVGSKEKEQYLINTYGDFITGIYSTMNKDYSEEIKLKLKQLKSDKHGVDLILNTLSSDYMDSNFKCLNIGGRI 2081          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 73/234 (31.20%), Postives = 106/234 (45.30%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----------------LLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGG 635
            MKA V+ +    + L+++EVE P++++ EVL+K+EA  +   D     G +P        PG E  G ++ V K V   KVGD+V        C                 L GG    GGYAE    PA  V  +P  +   + A       T +  +   S   PGE   ++ G  G+G  A+Q  K  G+ V     S+EK  + KDLGAD+ IN   ED V  + ++ GG
Sbjct:    1 MKAAVVNE--FKKALEIKEVERPKLEEGEVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCPHQLNGGYSVDGGYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKAL-KVSGARPGEWVAIY-GIGGLGHIALQYAKAMGLNVVAVDISDEKSKLAKDLGADIAINGLKEDPVKAIHDQVGG 230          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 74/240 (30.83%), Postives = 108/240 (45.00%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVI 653
            MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        PG E  G +  VG  V+  KVGD+V        C      L G                GGYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+G  A+Q  K  G+ V      +EKL + K+LGAD+ +N   ED    +KE+ GG    V+
Sbjct:    1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 236          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 75/240 (31.25%), Postives = 115/240 (47.92%), Query Frame = 3
Query:   18 MKAIVITQ--PGSPEVLQL-QEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVS-RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGRLFI 725
            M+ +V+T+  P   E + L ++   P   D ++L++     +N +D     G Y P        G E  G ++++G + S R+ VG Q  A +  G +AE   VPA    PVPS     +         T + ++     LS G+  LV   + G G FA+Q+ K     V  T  S+EK A  K LG D  INYKTE  V  V ++   +GVDV+ + +G + F   +D+L   GRL +
Sbjct:   33 MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVG-QAVAYMAPGSFAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIV 268          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS18_DICDI (Probable polyketide synthase 18 OS=Dictyostelium discoideum GN=pks18 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 70/233 (30.04%), Postives = 118/233 (50.64%), Query Frame = 3
Query:   90 IKDDEVLIKVEATALN-----------RADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL--SPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAGSEEKLAVCKDLGADV---CINYKTEDFVARVKEE-----TGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            IKDDE+ ++V+AT +N            A+++ R G    P+      G+E SG I  +G N++ +++GDQV   +G    +  V V        P+ +S ++AA+ P V  T   ++F    L  S  ES L+H G+ G+G  A+ + K +G +  VFVT GS+EK     D   D      + + +++V ++K +     +   GVD+IL+ + + Y + N   LN  GR+
Sbjct: 1858 IKDDEIEVEVKATGINYKDYLIYCGLVSAESINRYGDVNNPEF-----GIEYSGIISRIGNNITNFEIGDQVYG-MGLDTISTHVIVNPNYCYHKPTNISFQEAASIPCVYLTSLCSIFNIGCLSVSGNESILIHSGTGGVGLSALNILKWKGHKSHVFVTVGSKEKEKYLLDTYGDFITGIYSTRNKNYVEQIKLKLKQLGSNKNGVDLILNTLSSDYMESNFKCLNTSGRI 2084          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 71/229 (31.00%), Postives = 104/229 (45.41%), Query Frame = 3
Query:   45 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL---LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL-----SPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGA---SYFQRNL 692
            G    L+  +V  P  K +EV +K+EAT+LN  D   +KG   P  P+     P  + +G ++ VG  V  +K GD+V A+   LGGGG AE         +  P  V   +AAA P    T    +   + L         + LV   S G+G +A+Q+ K     V  T G+   +   K LGAD  ++YKT +  A   +   GK  D ++ C      S F+ NL
Sbjct:   16 GGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGA-RNIEFVKSLGADEVLDYKTPEGAA--LKSPSGKKYDAVVHCANGIPFSVFEPNL 241          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 64/196 (32.65%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   45 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL---SPGE--SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTED 602
            G  + L+  EV  P  K DE+L+K+EA  LN  D   +KG   P  P+     PG + +G ++  G  V+R+K GD+V A+L    GG  AE         +  P  VS  + AA P  A T    +   +++     GE  + L+   S G+G +A+Q+ K     V  T G+   L   K LGAD  ++YKT +
Sbjct:   16 GGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGA-RNLDFVKGLGADEVLDYKTPE 210          
The following BLAST results are available for this feature:
BLAST of FC931140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
ADH1_BACST2.114e-2031.05Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
QORL_ARATH3.606e-2032.75Quinone oxidoreductase-like protein At1g23740, chl... [more]
ZADH2_MOUSE6.150e-2030.29Zinc-binding alcohol dehydrogenase domain-containi... [more]
PKS14_DICDI1.049e-1930.70Probable polyketide synthase 14 OS=Dictyostelium d... [more]
ADH2_BACST1.370e-1931.20Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH3_BACST5.207e-1930.83Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ZADH2_HUMAN6.800e-1931.25Zinc-binding alcohol dehydrogenase domain-containi... [more]
PKS18_DICDI6.800e-1930.04Probable polyketide synthase 18 OS=Dictyostelium d... [more]
QORH_ARATH8.881e-1931.00Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL1.160e-1832.65Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101H08EF PostHarvP1 Citrus clementina cDNA clone C34101H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931140 ID=FC931140; Name=FC931140; organism=Citrus clementina; type=EST; length=726bp
GGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGACGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTTACCCG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCTTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAGTGAGGAAAAGCTGGC
TGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCAATTACAAGACTGAGG
ATTTTGTTGCACGAGTGAAGGAAGAAACTGGTGGTAAAGGTGTTGATGTA
ATTCTAGATTGCATGGGAGCATCCTACTTTCAGCGTAACCTCGACAGCTT
GAACATTGATGGGAGGCTTTTCATAA
back to top