FC931144

Overview
NameFC931144
Unique NameFC931144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931144_ssr40 microsatellite FC931144_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15281 contig Ccv1_Contig15281:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931144 vs. ExPASy Swiss-Prot
Match: DFRA_SYNY3 (Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803) GN=dfrA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 64/197 (32.49%), Postives = 99/197 (50.25%), Query Frame = 2 
Query:   68 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE----VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL-LQPT 643
            VTG +G++ + LV+ LL +GY V+A VR  + P   ++ L +D        +    L +G     + GC G+ H A+ +    KD +  L    V GT N+L +CA+   I+R V TSS+AA+   G  +      DE++ S  E      KQS+ W       AE  A   A ++  D+V +NP+  IGP  ++PT
Sbjct:   15 VTGGTGFVGANLVRHLLEQGYQVRALVRASSRPDNLQN-LPID--------WVVGDLNDGDLHQQMQGCQGLFHVAAHYSLWQKDREA-LYRSNVLGTRNIL-ACAQKAGIERTVYTSSVAAIGVKGDGQR----ADESYQSPVEKLIGAYKQSKYW-------AEQEALT-AAQQGQDIVIVNPSTPIGPWDIKPT 188
The following BLAST results are available for this feature:
BLAST of FC931144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DFRA_SYNY31.921e-1132.49Putative dihydroflavonol-4-reductase OS=Synechocys... [more]

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Properties
Property NameValue
Genbank descriptionC34101H12EF PostHarvP1 Citrus clementina cDNA clone C34101H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931144 ID=FC931144; Name=FC931144; organism=Citrus clementina; type=EST; length=751bp
GAACGATTGCGAGAATCAGTAGTTGACAATGAGCAGTGTAGCAGCAGCAG
CGGGGAAGGTCGTATGCGTGACCGGAGCATCGGGTTACATAGCTTCATGG
CTTGTCAAGCTTCTTCTTTCTCGTGGCTACACTGTCAAGGCCTCTGTTCG
TGATCCCAATGATCCAAAAAAGACAAGACACTTACTTGCACTTGATGGAG
CTTCGGAAAGACTTCAGTTGTTTAAGGCAAATCTTTTGGAAGAAGGATCC
TTTGATTCAATTGTTGATGGGTGCGATGGTGTTTGCCATACTGCATCTCC
CTTTTACCATGATGCCAAGGATCCGCAGGTGGAGTTACTTGATCCTGCTG
TGAAAGGAACTCTTAATGTTCTTAACTCATGTGCGAAGTTCCCTTCTATC
AAACGAGTGGTTTTAACATCTTCAATGGCTGCAGTTTTAAACACTGGAAA
ACCTCGAACCCCTGATGTGGTAGTTGATGAGACTTGGTTCTCGGATCCGG
AGGTTTGCAAGCAATCAGAGCTCTGGTATCCACTTTCAAAGACATTGGCT
GAGGATGCAGCTTGGAAATTTGCAAAGGAGAAGAGTATTGACTTGGTTAC
CATTAACCCGGCAATGGTTATTGGTCCTCTCTTACAGCCAACACTTAACA
CAAGTGCTGCTGCAGTTCTAAGCTTAATTAAAAGGAGCACAACTTACCCA
ATGTAACTTTTGGATGGGTTAACGTTAAAGATGTTGCCAATGCACATATT
C
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