FC931149

Overview
NameFC931149
Unique NameFC931149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.290e-30
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  444 ANRERMAQRS---VPAPFLMKTYQLVDDPSTDDVISWN-----ESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENFR 716
            A R++ A  S   VPAPFL KTYQLVDDP+TD V+SW      ES ++F+VW+  +FA+D+LPNYFKH+NFSSFVRQLNTYGFRK+V E+W FANE FR
Sbjct:    9 AARQKAAAASASVVPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFR 107          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.432e-29
Identity = 54/78 (69.23%), Postives = 69/78 (88.46%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENFR 716
            PFL KTY +V+DPSTD+ ISWN+SG  F+VW+ A+FA+DLLP +FKH+NFSSFVRQLNTYGF+K+VA++W FAN+ FR
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFR 87          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.243e-29
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            M   + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   33 MPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGF 117          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            + P PFLMKTY++VDDP+TD V+SW     +F+VW T +FA+DLLP YFKH+NFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   33 TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGF 113          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   35 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGF 115          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.587e-28
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 3
Query:  447 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENFR 716
            N    A+   P PFL+KTY++V+DP+TD VISWNE G  F+VW+ A+FA+DLLP  FKH NFSSFVRQLNTYGFRK+   +W F+NE FR
Sbjct:   28 NSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFR 117          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL+KTY++V+D +T+ V+SW   GA+F+VW   DF++DLLP YFKHNNFSSF+RQLNTYGFRKI  E+W FANE+F
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDF 96          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENFR 716
            PAPFL KT Q+V++ +TD+VISW + G +F+VWK  +FA+DLLP +FKH NFSSFVRQLNTYGFRK+V ++W FAN NFR
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFR 107          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            S+P PFL KTY +V+DP+TD ++SW+ +  +FIVW   +F++DLLP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGF 128          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            S+P PFL KTY +VDDP TDDV+SW+    +F+VW   +FAK  LP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   20 SIP-PFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGF 99          
The following BLAST results are available for this feature:
BLAST of FC931149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFB4A_ORYSJ1.290e-3064.65Putative heat stress transcription factor B-4a OS=... [more]
HFB2A_ORYSJ2.432e-2969.23Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSF8_SOLPE9.243e-2963.53Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSFA1_ORYSJ2.059e-2865.43Heat stress transcription factor A-1 OS=Oryza sati... [more]
HSF8_SOLLC2.059e-2865.43Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSFB3_ARATH4.587e-2862.22Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HFA4D_ORYSJ7.825e-2865.82Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFB1_ORYSJ3.883e-2766.25Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFA1A_ARATH3.883e-2762.96Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA1E_ARATH6.624e-2765.43Heat stress transcription factor A-1e OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34102A05EF PostHarvP1 Citrus clementina cDNA clone C34102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931149 ID=FC931149; Name=FC931149; organism=Citrus clementina; type=EST; length=717bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
CTCAATACTTATGGATTTCGGAAAATCGTGGCCGAACAATGGGGATTCGC
CAACGAGAACTTCCGTC
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