FC931149

Overview
NameFC931149
Unique NameFC931149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 43/78 (55.13%), Postives = 64/78 (82.05%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENFR 716
            PFL KT+++VDD  TD V+SW+ +  +FI+W + +F+++LLP YFKH NFSSF+RQLN+YGF+K+ +++W FANE F+
Sbjct:   71 PFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQ 148          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P  FL KTY +V+D ST++++SW+    +FIVW+   FA   LP  FKHNNFSSFVRQLNTYGF+KI  E+W FANE+F
Sbjct:   17 PTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHF 95          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  429 GGW*GANRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            GG   AN   + + S  APFL K Y +V DP+TD+VISW E G +F++W +  F +D L  +FKH+NF+SF+RQLNTYGFRK+  ++W +ANE F
Sbjct:   32 GGASTANGPVVPKPSEVAPFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERD-LHRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGF 125          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNE--SGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            PAPF+ KTY++V D +TD V+SW    SGA+F+VW     A  +LP +FKH NFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   91 PAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAF 171          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGA-TFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APFL+KT+++V+DP+TD V+SW  +   +F+VW    FA  LLP +FKH NFSSF+RQLNTYGFRK+ A++W FANE+F
Sbjct:   42 APFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDF 120          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APF+ KT+ +V DPST+ V+ W  +G TF+V   A F+  LLP+YFKH NF+SFVRQLNTYGFRK+  ++W FA+E+F
Sbjct:   23 APFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESF 100          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGA-TFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APFL K Y +VDD +TD +ISW+ S   +F++  T  F+  LLP YFKH+NFSSF+RQLN YGFRK+ A++W FAN+ F
Sbjct:   18 APFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGF 96          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APF+ KTY++V+DP TD VI W +   +F+V     F++ LLP +FKHNNFSSFVRQLNTYGFRK+  ++W FA+ +F
Sbjct:   10 APFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASF 87          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APF+ KTY++VDDP+TD VI+W     +F+V     F++ LLP +FKH+NFSSFVRQLNTYGFRK+  ++W FA+ +F
Sbjct:   13 APFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSF 90          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  480 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            APF+ KTYQ+V DP TD ++ W     +F+V   A F++ LLP +FKH NFSSFVRQLNTYGFRK+  ++W FA+E+F
Sbjct:   25 APFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESF 102          
The following BLAST results are available for this feature:
BLAST of FC931149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSFA9_ARATH5.803e-2355.13Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFA6A_ARATH2.205e-2259.49Heat stress transcription factor A-6a OS=Arabidops... [more]
HSFA9_ORYSJ4.912e-2251.58Heat stress transcription factor A-9 OS=Oryza sati... [more]
HFA6B_ORYSJ4.912e-2259.26Heat stress transcription factor A-6a OS=Oryza sat... [more]
HFA6A_ORYSJ4.912e-2259.49Putative heat stress transcription factor A-6a OS=... [more]
HFC1B_ORYSJ4.159e-2157.69Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSFA8_ARATH1.210e-2056.96Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFC2B_ORYSJ1.580e-2056.41Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFC2A_ORYSJ1.580e-2056.41Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFC1A_ORYSJ6.005e-2056.41Heat stress transcription factor C-1a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34102A05EF PostHarvP1 Citrus clementina cDNA clone C34102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931149 ID=FC931149; Name=FC931149; organism=Citrus clementina; type=EST; length=717bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
CTCAATACTTATGGATTTCGGAAAATCGTGGCCGAACAATGGGGATTCGC
CAACGAGAACTTCCGTC
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