FC931149

Overview
NameFC931149
Unique NameFC931149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  462 AQRSVPAP-FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            A  + P P FL K + LV+DP +DDVI W+ +G  F +     FAK+LLP YFKHNN SSF+RQLN YGFRK+VA + G
Sbjct:   10 APGAAPVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENG 88          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V  + G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQG 87          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V  + G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQG 87          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            +VPA FL K + LV+DP TD +I W+  G +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V  + G
Sbjct:   11 NVPA-FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQG 84          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            FL K + LV+DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V  + G
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQG 92          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+ + G
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQG 89          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+ + G
Sbjct:   18 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQG 90          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+ + G
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQG 89          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG------------FANENFR 716
            F  K Y +V+D STD +I W++ G +F+V    DFAK +LP YFKHNNFSSFVRQLN YGF K+   Q G            FAN NF+
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQ 141          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWG 695
            +VPA FL K + LV DP TD +I W+ SG +F V     FAK++LP YFKH+N +SFVRQLN YGFRK+V  + G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQG 87          
The following BLAST results are available for this feature:
BLAST of FC931149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF3_CHICK3.295e-1855.70Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF1_MOUSE6.214e-1757.33Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN6.214e-1757.33Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF_XENLA8.116e-1756.00Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF1_CHICK8.116e-1757.14Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF4_MOUSE1.384e-1656.76Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN1.384e-1656.76Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA1.384e-1656.76Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF_SCHPO3.084e-1650.56Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF1_BOVIN5.261e-1656.00Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34102A05EF PostHarvP1 Citrus clementina cDNA clone C34102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931149 ID=FC931149; Name=FC931149; organism=Citrus clementina; type=EST; length=717bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
CTCAATACTTATGGATTTCGGAAAATCGTGGCCGAACAATGGGGATTCGC
CAACGAGAACTTCCGTC
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