FC931153

Overview
NameFC931153
Unique NameFC931153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11773 contig Ccv1_Contig11773:396..1122. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931153 vs. ExPASy Swiss-Prot
Match: RHDF2_CANFA (Rhomboid family member 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 2 
Query:  212 LDKM-GALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHI 625
            LDK+ G L         Q +RL   ++LH GV H L +++  + I   LE+  G+ RI  +++LSG  G+L SA+F+                     ELF +W +      A L L  I+      G+LP +DN AHI
Sbjct:  607 LDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHI 745
The following BLAST results are available for this feature:
BLAST of FC931153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RHDF2_CANFA4.027e-1131.65Rhomboid family member 2 OS=Canis familiaris GN=RH... [more]

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Properties
Property NameValue
Genbank descriptionC34102A09EF PostHarvP1 Citrus clementina cDNA clone C34102A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931153 ID=FC931153; Name=FC931153; organism=Citrus clementina; type=EST; length=727bp
GTACAGTGATTTTTTGAGCCCGCTTAAACGGCATTTCCCGTGGATGGTCC
CGGGTTTCGTCGTAGCCAACATTGTTTTGTTTGTTATCACAATGTACGAA
AATAATTGCCCTCAAACTTCTGCTACTGGTTGTTTGGGTGCCAAATTTTT
GGGTAGATTTTCATTTTTGCCCCTGAAAGACAATCCCCTCCTCGGCCCTT
CCTCTCCCGCGTTAGACAAGATGGGTGCTTTAACAGTAGCCAAGGTGGTA
ACTCAACACCAAGTGTGGCGTTTGTTGACTTGTATATGGTTGCATGGTGG
GGTTTTCCATGTACTTGCCAATATGTTGAGTCTACTATTCATTGGAATTC
GGCTTGAACAAGAATTTGGATTTGTTCGAATTGGATTCCTCTACGTCCTC
TCTGGTTTTGGTGGGAGTTTGACGTCGGCTCTTTTTATTCAAGAGGGTAT
ATCTGTCGGTGCCTCTGGAGCTCTTTTTGGTTTACTTGGAGCAATGCTCT
CGGAGCTTTTCACAAATTGGACTATCTATGCAAATAAGTTGGCAGCATTG
CTTACTCTCATTGTCATCATCAGTATAAATTTGGCAGTGGGAATCCTCCC
AAAAGTGGACAACTTTGCTCATATTGGAGGATTTCTTTCTGGTTTTCTTC
TTGGATTTGTGCTTCTAATCCGGCCTCAGTTTGGATGGATTAGTCAGAAA
AAGCTCCCCCTGGATACATGATAAATT
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