FC931158

Overview
NameFC931158
Unique NameFC931158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931158_ssr21 microsatellite FC931158_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14460 contig Ccv1_Contig14460:72..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931158 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  193 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQ 456
            +L V N+     P+ LR  FE++G V DVY+P++ +T  PRGFAFV+F D  +A +A+  M+G    GRE+ V +A   R+     RQ
Sbjct:   15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQ 102          
The following BLAST results are available for this feature:
BLAST of FC931158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SFR2B_HUMAN3.108e-1140.91Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC34102B02EF PostHarvP1 Citrus clementina cDNA clone C34102B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931158 ID=FC931158; Name=FC931158; organism=Citrus clementina; type=EST; length=730bp
GAATCTAGTTGCAAAGTCTTCTCTCCTCTCCTCTCTTGTCTTTCTCGTAC
AGGCTGTGCTATGAGAAGGTACAGTCCACCATACTACAGTCCTCCGAGGA
GGGGATACGGAGGCCGAGGAAGAAGCCCTCCGAGAAGAGGATACGGTGGC
GGTGGAGGAGGCTATGGAAGACGCAAGGAACAGAATCATGGTAGCCTTTT
GGTTCGAAACATTCCGCTTGATTGCAGGCCTGAAGAACTCCGTGCTCCGT
TCGAGAGGTTTGGGGTTGTTAGGGATGTCTACCTTCCTAAGGATTACTAC
ACTGGGGAACCTCGAGGGTTTGCGTTTGTGCAATTTGTGGATCCTTATGA
AGCTGCTGAAGCTCAACACCATATGAATGGGAAACGTTTTGCTGGGAGGG
AAATATCTGTAGTCCTTGCTGCAGAGTCAAGGAAAAGGCCGGAGGAGATG
CGGCAAAGACATAGGTTTAGAGGAGGGTCGAGCTATGGAGGACCGCGATC
ATCTTATTATGGACGTTATCGGTCCCGTTCACTATCCCGTTCACGTTCCC
CTCATCATCCTCAAGGTTCTAGAAGCCGGTACCGCTCTAGATCTTACACT
CCTGGTCCCAGACAACACGAAGAATTACTCATTTCTCCTCGGAGAAGGCA
CATAGAACACCCAGGATCACCAAGAGGTCCTCCANCAGAGCGAGGTGTTG
AATACAGTCGTAGATCATATTCTCCTGGAT
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