FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:174..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALSV (3-ketoacyl-CoA thiolase OS=Salmonella schwarzengrund (strain CVM19633) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALPB (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDGNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALNS (3-ketoacyl-CoA thiolase OS=Salmonella newport (strain SL254) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALHS (3-ketoacyl-CoA thiolase OS=Salmonella heidelberg (strain SL476) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALEP (3-ketoacyl-CoA thiolase OS=Salmonella enteritidis PT4 (strain P125109) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALDC (3-ketoacyl-CoA thiolase OS=Salmonella dublin (strain CT_02021853) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 64/243 (26.34%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +  P T  +   G      A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYKN-PFTEDNNIRGTSTL--ADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALAR (3-ketoacyl-CoA thiolase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++       +   S    +D  + G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVSELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAYRSHQRAAQAWAEGKLAEEVMTTYAPPYKNPFS----EDNNIRGNSTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALA4 (3-ketoacyl-CoA thiolase OS=Salmonella agona (strain SL483) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADI_SALSV3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella schwarzengru... [more]
FADI_SALPB3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella paratyphi B ... [more]
FADI_SALPA3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADI_SALNS3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella newport (str... [more]
FADI_SALHS3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella heidelberg (... [more]
FADI_SALEP3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella enteritidis ... [more]
FADI_SALDC3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella dublin (stra... [more]
FADI_SALCH3.515e-1226.343-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADI_SALAR3.515e-1225.823-ketoacyl-CoA thiolase OS=Salmonella arizonae (st... [more]
FADI_SALA43.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella agona (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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