FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:174..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 78/234 (33.33%), Postives = 118/234 (50.43%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANLGQAP--ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  ++A   R AN+ P+ V +V +G V +  L Q+   AR AA+  GIP +V   TVN++C S + A+ +A+ +I+ G+ D  + GG+E M + P           + H   VD       +       MG  AEL  + H + RE QD F V S +R  AA + G F  EIV VE     G    ++D+DE + +  +   + KL+P F   GGTVTAG +
Sbjct:   24 GAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP-----------MTHG--VDVNPAASKYAAKAAMMMGLTAELLGKMHGVGREEQDAFGVRSHQRAQAANENGYFDNEIVGVEGHDADGF-LRLIDRDEVIRQDANLEDMGKLKPVFDPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 73/213 (34.27%), Postives = 105/213 (49.30%), Query Frame = 2
Query:   77 LKRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            L+  N+DP+ ++++++G V      G   AR AAL AGIP  V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M + P               +   GM             MG  AE+  + H I+R+ QD+FA  S  R  AA   G FA EIV +E     G      D DE +      + L +LRP F    GTVTAG +
Sbjct:   40 LRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM-------------MGLTAEMLGKLHGISRQQQDEFAARSHRRAHAATVEGRFAKEIVGLEGHDASG-ARFFYDYDEVIRPETTVETLSQLRPVFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 79/240 (32.92%), Postives = 115/240 (47.92%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  L R   +DP+ +++V +G V      G   AR A+L AGIP +    TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L + + K  G+        MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVP-----MNHGVDF-HPGLANNVAKASGM--------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIEGHDANGALIKVLHDEVIRPETSMESLAALRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 79/240 (32.92%), Postives = 115/240 (47.92%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  L R   +DP+ +++V +G V      G   AR A+L AGIP +    TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L + + K  G+        MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVP-----MNHGVDF-HPGLANNVAKASGM--------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIEGHDANGALIKVLHDEVIRPETSMESLAALRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 78/239 (32.64%), Postives = 111/239 (46.44%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++A L R   +DPSL+++V +G V      G   AR A+L AGIP +    TVN++C S + AI  A+++I  G+ D  + GG+E M + P               +   GM             MG  AE+  + H I+RE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKALLIRNPQLDPSLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANRVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAVRSHQRAHAATVEGRFAKEIWAMEGHDANGALIKVMHDEVIRPETTMESLAGLRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 83/242 (34.30%), Postives = 121/242 (50.00%), Query Frame = 2
Query:    8 GGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVS----AGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            GGF  TL       L +  ++A ++R ++DPS V ++  G V++    +A   R AA  AG P+SV   TVN+ C+SGL+A+   + SI+ G  D+ +  G+ESMS           G   G +       K        DC   MG  +E  AE+  +TRE QD  AV S +R  AA  +G    EI+PV         + + + +V  D+G+    + A L KL+  FK+NG T TAGNA
Sbjct:   67 GGFKDTLPD----DLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMST-----DHIPGGGFHGSNPRAQDFPK------ARDCLLPMGITSENVAERFGVTREEQDMAAVESHKRAAAAIASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDGVRPNSNMADLAKLKTVFKQNGST-TAGNA 292          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 77/234 (32.91%), Postives = 120/234 (51.28%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H I+RE QD FA+ S ++   A   G F  EI+P+E     G   T+V  DE +      + L  LRP+F    GTVTAG++
Sbjct:   20 GVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----MNHGVDF-HSGLSKSVAKASGM--------MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIEGHDENG-VLTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 77/234 (32.91%), Postives = 120/234 (51.28%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H I+RE QD FA+ S ++   A   G F  EI+P+E     G   T+V  DE +      + L  LRP+F    GTVTAG++
Sbjct:   20 GVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----MNHGVDF-HSGLSKSVAKASGM--------MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPMEGHDENG-ALTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 79/240 (32.92%), Postives = 115/240 (47.92%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  L R   +DP+ +++V +G V      G   AR A+L AGIP +    TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L + + K  G+        MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVP-----MNHGVDF-HPGLANNVAKASGM--------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIEGHDATGALIKVLQDEVIRPETTMESLAVLRPVFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 78/240 (32.50%), Postives = 115/240 (47.92%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  L R   +DP+ +++V +G V      G   AR A+L AGIP +    TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L + + K  G+        MG  AE+  + H I+RE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNAIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVP-----MNHGVDF-HPGLANNVAKASGM--------MGLTAEMLGKLHGISREQQDAFAVRSHQRAHAATVEGRFAKEIYAIEGHDANGALIKVLHDEVIRPETSMESLAALRPVFDPANGTVTAGTS 238          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_CHRSD1.205e-2033.333-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
FADA_AERHH1.205e-2034.273-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_SHESM1.574e-2032.923-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESA1.574e-2032.923-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEDO1.574e-2032.643-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
THIK5_ARATH2.056e-2034.303-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
FADA_VIBFM2.056e-2032.913-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF12.056e-2032.913-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SHEON2.056e-2032.923-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADA_SHESR3.507e-2032.503-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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