FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:174..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 73/222 (32.88%), Postives = 114/222 (51.35%), Query Frame = 2
Query:   65 IEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEV-----SAGRGKPSTIVDKDEGLGKFDP-AKLRKLRPSFKENGGTVTAGNA 709
            + A +++ N++PS V ++  G VL+    +A   R AA  AG P +V   TVN+ C+SGL+A+   + +I+ G  D+ +  G+ESM+  P           +  +  V+  +K           MG  +E  A++  ++R+ QD  AV S  +  AA  AG F  EI+PV+        G  KP T V  D+G+      A L KL+P FK++ GT TAGN+
Sbjct:   83 LRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNP-----------MAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPIT-VSVDDGIRPTTTLASLGKLKPVFKKD-GTTTAGNS 291          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 75/238 (31.51%), Postives = 119/238 (50.00%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEV-----SAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G+       +L +  + A +++ NV+PS V ++  G VL     +A   R AA  AG P +V   TVN+ C+SGL+A+   + +I+ G  D+ +  G+ESM+  P+           G    V+  +K   ++  ++C   MG  +E  A + +++RE QD  AV S  +  +A  +G F  EI PV+        G  KP T+   D        + L KL+P FKE+ GT TAGN+
Sbjct:   60 GSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPR-----------GWKGSVNPNVKK--FEQAHNCLLPMGITSENVAHRFNVSREEQDQAAVDSHRKAASATASGKFKDEITPVKTKIVDPKTGDEKPITVSVDDGIRPNTTLSGLAKLKPVFKED-GTTTAGNS 283          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 77/233 (33.05%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  ++A L R   VDP+ +++V +G V      G   AR A+L AG+P +    TVN++C S ++A+  AS++I  G+ D  + GG+E M + P             + +   GM             MG  AE+  + H I+RE QD FAV S +R  AA   G FA EI  +E     G     VD DE +  +     L  LRP F    GTVTAG +
Sbjct:   20 GVFRNVRAETLSAELMKALLLRNPGVDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGVPKTAGAVTVNRLCGSSMEALHQASRAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLAANVAKASGM-------------MGLTAEMLGKLHGISREMQDQFAVRSHQRAHAASIEGRFANEIYAIEGHDANG-ALIKVDYDEVIRPETTLESLAGLRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 75/240 (31.25%), Postives = 116/240 (48.33%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  I+A   R + VDP+ V+++ +G V  +   G   ARQ +L   IP++    TVN++C S + AI  A+Q+I  G  DV V GG+E M + P         +   + +    M             MG  AE+ A+ H I+R+ QD+F   S      A   G F  EI+ ++     G P+ +++ DE +     A+ L +LRP+F    GTVTAG +
Sbjct:   17 PMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVPMTQGFDHNPAASKYSAKASNM-------------MGLTAEMLAKMHGISRQQQDEFGARSHRLAHEATLEGRFRNEIISIQGHDDDGFPA-LIENDETIRPETTAESLAQLRPAFDPKSGTVTAGQS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 75/240 (31.25%), Postives = 120/240 (50.00%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  + R   +DP+ ++++++G V      G   AR A+L AGIP++V  TTVN++C S ++A+  A+++I +G  +  + GG+E M + P        G    H  +   + K           MG  AE+    H I+R+ QD+FA  S +R  AA   G F  EI+P+E     G    + D DE +      + L  LRP+F    GTVTAG++
Sbjct:   13 PMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHMGHVP-----MNHGVDF-HPGMSKSVAKAA-------GMMGLTAEMLGRMHGISRQMQDEFAARSHQRAHAATIEGRFKNEILPIEGHDENG-ILKLYDYDEVIRPETTVEGLSNLRPAFDPVNGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 75/239 (31.38%), Postives = 110/239 (46.03%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++A + R   +DP+ +++V +G V      G   AR A+L AGIP +    TVN++C S + A+  A+++I  G  D  + GG+E M + P               +   GM             MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E     G    ++  +    +     L  LRP+F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAETLSAELMKALMVRNPQLDPNDIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDALHQAARAIMTGQGDTFIIGGVEHMGHVPMNHGVDFHPGLANRVAKASGM-------------MGLTAEMLGKMHGITREQQDAFAVRSHQRAHAATIEGRFAKEIWGIEGHDANGALIKVMTDEVIRPETTLESLAGLRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 68/213 (31.92%), Postives = 107/213 (50.23%), Query Frame = 2
Query:   95 DPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYL-------AEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEG-LGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            D +L++EV  GNVL+   G    R A L +GIP S     +N+ C+SGL A+   +  I++G  D+ +A G+ESM+N  K +       +E  + +R     L+                MG   E  A    I+R++QD+FA  S+++   A++ G F  EI+P+++  G     +I   DEG         L  +RP+F ++ GT TAGNA
Sbjct:   81 DLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLI---------------PMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDG-----SICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNA 273          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 2
Query:   80 KRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +   V+PS ++++++G V      G   AR AAL AG+P  +   TVN++C S ++A+   +++I  G  ++ + GG+E M + P             H +   GM             MG  AE+  + H I+RE QD+FA  S  R  AA   G F  EI+P E  A  G   T+ D DE +      + L +LRP F    GTVTAG +
Sbjct:   41 RNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHMGHVPMNHGVDFHPGMSKHVAKAAGM-------------MGLTAEMLGKLHGISREQQDEFAARSHARAHAATMEGRFKNEILPTEGHAADGTLFTL-DHDEVIRPETTVEGLSQLRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 73/233 (31.33%), Postives = 108/233 (46.35%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLS-ANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  I   L R A +DP+ + ++ +G V+     G   AR   L AG+P++V   TVN++C S + A+  A+ +I  G+ DV + GG+E M +             LGH                   SMG  AE  +  H ITRE  D+F   S  +   A + G FA EI+        G P T++  DE +      + L KL+P+F   GGTVTAG +
Sbjct:   24 GCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGHIDMN-QHVDPNPALGHSV------------AQAAGSMGLTAEYLSLLHGITREAMDEFGARSHRKAAEATEQGKFAREIIARIGHDETGAP-TLIKHDETIRPDTTVEALSKLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 79/243 (32.51%), Postives = 117/243 (48.15%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R + VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H I+RE QD FAV S +    A   G F  EI+P++     G    I D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTS 242          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
THIK2_ARATH4.580e-2032.883-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH4.580e-2031.513-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_SHEAM4.580e-2033.053-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADA_HAHCH1.333e-1931.253-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_PHOPR2.969e-1931.253-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_SHEFN3.877e-1931.383-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
THIK_YEAST1.128e-1831.923-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_VIBVU1.128e-1832.553-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_SACD21.128e-1831.333-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_PSEFR1.128e-1832.513-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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