FC931160

Overview
NameFC931160
Unique NameFC931160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  402 HLLALFAPF-CFT---WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            HL AL+  + CFT   W +L  +F L+ ++ + GIT   HR  +H++FK    LE +       + Q   I W   HR HH++ D++ DPH+   GF++SH+ WL
Sbjct:   48 HLAALYGLYLCFTSAKWETLLFSFVLFHMSNI-GITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWL 151          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ L V F  Y V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ L V F  Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ + V F  Y + G LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL
Sbjct:   82 LHLGALYGITLIPTCKIYTYIWVLF--YYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWL 185          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  387 VVLAMHLLALFA----PFCFTWSSLRVAFGL-YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +++ +HL  L+     P C  ++ L   FG+ Y +T  LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL
Sbjct:   74 LMVLLHLGGLYGIILVPSCKLYTCL---FGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 181          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_CYPCA (Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  399 MHLLALFAPFCF------TWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+  F F      TW    + F   ++   LGIT   HR  SHRS+K    L+   A     + Q +  +W   HR HH++ +++ DPH+ + GF+FSH+ WL
Sbjct:   49 LHLGALYGLFLFPSARALTW----IWFFGCLLFSALGITAGAHRLWSHRSYKASLPLQIFLALGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNAVRGFFFSHVGWL 152          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL
Sbjct:   81 LHLGALYGITLVPSCKLYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 184          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 3
Query:  396 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF 707
            A  L  L+A FCF  ++L             G+T   HR  SHRS+K    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF
Sbjct:   75 AQPLTLLWAYFCFLLTAL-------------GVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLF 165          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +H+ AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL
Sbjct:   81 LHIGALYGITLVPSCKVYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 184          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 38/106 (35.85%), Postives = 52/106 (49.06%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ L   F  Y     LGIT   HR  SHRS+K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL
Sbjct:   82 LHLGALYGITLIPTCKFYTWLWGVF--YYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWL 185          
The following BLAST results are available for this feature:
BLAST of FC931160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ACO11_TRINI3.153e-1336.19Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
ACOD_SHEEP7.025e-1336.79Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD_CAPHI1.565e-1235.85Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACOD_BOVIN1.565e-1235.85Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD1_MOUSE2.669e-1234.23Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_CYPCA3.486e-1235.19Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2[more]
ACOD2_MOUSE5.947e-1235.85Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
SCD5_BOVIN7.767e-1234.62Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD2_RAT7.767e-1234.91Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]
ACOD_HUMAN1.325e-1135.85Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34102B04EF PostHarvP1 Citrus clementina cDNA clone C34102B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931160 ID=FC931160; Name=FC931160; organism=Citrus clementina; type=EST; length=707bp
GACGCAGAGAAAACGGAAAGCCTTTCTCCATGGCTTTCATCACAACATCA
CCAACCAAACCAAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAA
AACTCAAACCGATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACA
AGCTAATAAAAACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGA
GAGTCACTAGCAATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAA
GCCAGAGCCAGAGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAA
TTTTGTTATCTGATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGG
GGGAATTGGAACTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAAT
GCATTTGCTTGCTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTA
GGGTTGCTTTTGGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTT
TCTTTTCACAGAAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCT
TGAGTACTTGTTTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAA
TTGATTGGGTAAGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAA
AGGGATCCGCATAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTG
GCTGTTT
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