FC931160

Overview
NameFC931160
Unique NameFC931160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: SCD5_HUMAN (Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 35/104 (33.65%), Postives = 52/104 (50.00%), Query Frame = 3
Query:  396 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF 707
            A  L  L+A FCF  ++L             G+T   HR  SHRS++    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF
Sbjct:   70 AKPLTLLWAYFCFLLAAL-------------GVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLF 160          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  399 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            +HL AL+     P C  ++ L  AF  Y+++ + G+T   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL
Sbjct:   71 LHLGALYGIILIPTCKIYTLLW-AFAYYLLSAV-GVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWL 174          
BLAST of FC931160 vs. ExPASy Swiss-Prot
Match: ACO1_YEAST (Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae GN=OLE1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 3
Query:  468 YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 704
            Y   G + IT  +HR  SHRS+     L   +A  G  S++G+   W  +HR HH++ D+ RDP+    G W+SHM W+
Sbjct:  148 YYAVGGVSITAGYHRLWSHRSYSAHWPLRLFYAIFGCASVEGSAKWWGHSHRIHHRYTDTLRDPYDARRGLWYSHMGWM 226          
The following BLAST results are available for this feature:
BLAST of FC931160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SCD5_HUMAN2.260e-1133.65Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 ... [more]
ACOD_PIG2.260e-1133.96Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACO1_YEAST2.260e-1137.97Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionC34102B04EF PostHarvP1 Citrus clementina cDNA clone C34102B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931160 ID=FC931160; Name=FC931160; organism=Citrus clementina; type=EST; length=707bp
GACGCAGAGAAAACGGAAAGCCTTTCTCCATGGCTTTCATCACAACATCA
CCAACCAAACCAAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAA
AACTCAAACCGATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACA
AGCTAATAAAAACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGA
GAGTCACTAGCAATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAA
GCCAGAGCCAGAGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAA
TTTTGTTATCTGATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGG
GGGAATTGGAACTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAAT
GCATTTGCTTGCTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTA
GGGTTGCTTTTGGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTT
TCTTTTCACAGAAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCT
TGAGTACTTGTTTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAA
TTGATTGGGTAAGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAA
AGGGATCCGCATAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTG
GCTGTTT
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