FC931165

Overview
NameFC931165
Unique NameFC931165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:132..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.573e-37
Identity = 76/205 (37.07%), Postives = 119/205 (58.05%), Query Frame = 2
Query:  128 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            GFLGLG+MG  I  +L+  G KV VWNRT+ KC      GA V  +P +V++   +    ++DP  A  +VF   GVL+ +    K  ++MST+D +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++++++E  S    I K  FFLG +GN  K+ L++  I+G  +   +E L LA++  +    ++D+ DL
Sbjct:  319 GFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKDLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEGMLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALALADRFSISLNDIIDIFDL 523          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.973e-37
Identity = 79/209 (37.80%), Postives = 119/209 (56.94%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            ++  GFLGLG+MG  I  +L+  G KV VWNRT+ KC   V  GA V  +P +V++   I    ++DP  A  +VF   GVL+ +    K  ++MSTVD +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++ +++E  S    I K  FFLG VGN  K+ L++  I    +   +E L LA++  +    ++D+ DL
Sbjct:  325 ELTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKDLVFGNCGVLQLKDLRNKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADGMLIILAGGDRTVFEECHSCFKTIAKNTFFLGNVGNACKVNLILQTIQAVSLVGLAEALALADRFSISLNDIIDIFDL 533          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 71/211 (33.65%), Postives = 115/211 (54.50%), Query Frame = 2
Query:  119 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 751
            M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GE+G G   KL   +I+   +   SE L LA K+G++P  +   +  GG+A
Sbjct:    1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI-RGGLA 210          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 71/211 (33.65%), Postives = 115/211 (54.50%), Query Frame = 2
Query:  119 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 751
            M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GE+G G   KL   +I+   +   SE L LA K+G++P  +   +  GG+A
Sbjct:    1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI-RGGLA 210          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 67/208 (32.21%), Postives = 108/208 (51.92%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPAEV +K    I ML     A+ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  +SGLDP+ L  +L++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNM 245          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 65/208 (31.25%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     ++ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG+G   K+  NM++   M   +E + L  +SGLDP+ L  +L++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNM 245          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 2
Query:  119 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAK-MKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV 730
            M++  +GLG MG+ I+ N+L+ G+++TV+NRT  K ++LV  GA    +P    K   I I MLAD  +  +V F + G+LE +      I MST+  E S K++ A   KG  FL APV G    A    L I++AG       A   L+ + ++ F +GE    A   K+ +N ++  M+   SE  ++ EK GL+ +  L++
Sbjct:    1 MKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDVGEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEI 205          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 63/204 (30.88%), Postives = 105/204 (51.47%), Query Frame = 2
Query:  125 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 736
            VGF+GLG MG   ++NL++ G  + V++ +    + L   GA +  SPAEV K+  + + ML   A   +V   + G+ + + PG   +D ST+D  T+ +++          L+ PVSG    AE G L  +  G +  ++ A + L  +GK     G+VG G   K+  N+++G  M   SE + L  K G+DP+ L  + +
Sbjct:   25 VGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFN 228          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 63/209 (30.14%), Postives = 109/209 (52.15%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 742
            K  +GF+GLG+MGK+++ ++L +G  V V+ RT  K + ++  GA    +  ++ K+  + I M+  P+    V F   G++E    G   IDM+T     + KI+ A   K    L+APVSG    A+ G L I+  GEK  ++  +   +++G+   + G  G+G   K+   + +   M   +E +  A+KSGL+P  +L  +  G
Sbjct:    2 KKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTG 210          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  + GLDP+ L  +L++
Sbjct:   39 KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNM 246          
The following BLAST results are available for this feature:
BLAST of FC931165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYR1_DROME4.573e-3737.07Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GLYR1_DROPS5.973e-3737.80Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GARR_ECOLI2.275e-2833.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL62.275e-2833.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_MOUSE1.630e-2632.213-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT3.632e-2631.253-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
YFJR_BACSU4.744e-2634.15Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]
3HIDH_DICDI4.016e-2530.88Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YKWC_BACSU5.245e-2530.14Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
3HIDH_PONAB1.168e-2430.773-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC34102B09EF PostHarvP1 Citrus clementina cDNA clone C34102B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931165 ID=FC931165; Name=FC931165; organism=Citrus clementina; type=EST; length=756bp
GGATTAAAGATTCTTGCTTTATCTAAGTTTGGACTCTGCTGAGAGTTGCA
AGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAAGA
TATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATTAT
GGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACTG
TATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGCT
ACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTAT
TGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAG
GTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTGCATTGACATGTCA
ACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAAA
AGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCAG
AAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGAT
GAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGG
GGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATGG
GCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGT
GGACTTGACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATTGC
TAATCC
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