FC931165

Overview
NameFC931165
Unique NameFC931165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:132..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  + GLDP+ L  +L++
Sbjct:   39 KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNM 246          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 62/208 (29.81%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  116 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 739
            K  VGF+G+G MG  ++ NL+++G+ + +++     C E +  G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  N+++   M   +E + L  + GLDP+ L  +L++
Sbjct:   39 KTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNM 246          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 63/204 (30.88%), Postives = 107/204 (52.45%), Query Frame = 2
Query:  128 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 736
            GF+GLG MG  ++ NL++NG K+ V++   +   E  A G  V   PA++       I +L       +V   + G+ + I PG  C+D ST+D   S+++++A       +++AP+SG    A+   L  ++ AG  A +  A + L+++GK    LG VGNG   K+  NM++G  M   +E + L    GLD + L  +++
Sbjct:    5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVN 208          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 66/213 (30.99%), Postives = 113/213 (53.05%), Query Frame = 2
Query:  119 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 754
            M++GF+GLGIMG  +++NL R G ++ V   T+    DEL++ GA    +  +V +   I   M+ D      V+F + G  +    GK  +DMS++    + + +R +   GG +L+APVSG +  A  G L I+  G++A+++       ++GK    +G  G+G   K+   +I+   +   SE L+ A K+G DP  +   L +GG A+
Sbjct:    1 MKLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL-MGGFAS 210          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 65/204 (31.86%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  125 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 736
            +GF+GLG MG  ++ NL++ G K+ V++ +   CD L A GATV    +E+ K     I ML + A  +   +D+    + +      ID ST+  +    + + I++KG  F++APVSG    AE   L  +  G +A Y+   + L  +GKK    G  G G   KL  NM++   M   SE + LA + GLD     ++++
Sbjct:   31 IGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAI-VDASYDEM-TADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIIN 232          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 66/204 (32.35%), Postives = 100/204 (49.02%), Query Frame = 2
Query:  122 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 733
            ++ FLGLG MG  ++ NLL+ G +V V++        LV  GA    S  +  +   + I ML       S+     G+L ++      ID ST+  ET+ K++ A  +KG   L+APVSG    A  G L  +  G    +  A   L  +G+  F  G+ G G   K+  NM++G +M   +E L L  K+GLDP  L +V+
Sbjct:    3 DIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVM 206          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  122 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 742
            ++   GLG+MG  ++ NL++NG++   +NRTL +    E    G  V  S A       I +  + D      ++   GG+ E   P    ID ST+    + +++  +  +G  FL+APV+G    A  G L I+  G+ + ++EA+  L  IG+K    G  G+G  +KL   ++ G      +E + L+E+ G+ P  ++D    G
Sbjct:    5 KIAVFGLGVMGSPMAQNLVKNGYQTVGYNRTLERPSVQEAAKAGVKVVTSIAVAAANADIILTCVGDEKDVQQLILGSGGIAEYAKPQALIIDCSTIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGIAPELVIDTCGSG 213          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 59/208 (28.37%), Postives = 108/208 (51.92%), Query Frame = 2
Query:  122 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 742
            +V F+GLG+MG  ++ +L++ G  VTV+NRT +K  + V  +G     +P +  +   I    + +      VV  + G++  +  G   +D +T   + + +I+  I      FL+APVSG +  AE G L ++  G++A +D     ++   + A  LG VG G   K+V  + +  ++   +EGL  A+ +GLD   +++V+  G
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLDGLKVIEVISKG 210          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 71/222 (31.98%), Postives = 105/222 (47.30%), Query Frame = 2
Query:  110 NKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL---EQICPGKGCIDMSTVDHETSIKISRAITS----------KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 736
            N+   VGF+GLG MG  +  NL+R G+KVTV +            G +   +P EV +   + I ML   +  + V     G+L     I P    ID ST+D +T+ KIS A+++          +    L+APVSG    AE G L  +  G +  Y  A   L  +G+ + + G  GNG+  K+  N+ M   M   SE L L +  G+   TL +VL+
Sbjct:   35 NQFQNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPAL-FIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLN 255          
BLAST of FC931165 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 57/194 (29.38%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  125 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGCIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 706
            + F+GLG MG  ++ NLL+ G ++ V++        LV  GAT   +PA+  K     I ML +     +V+F + GV E +      IDMST+    + K+   + +KG   ++ PV  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E   L
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNL 197          
The following BLAST results are available for this feature:
BLAST of FC931165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
3HIDH_HUMAN1.168e-2430.773-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN2.603e-2429.813-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_CAEEL7.573e-2430.88Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
GLXR_ECOLI1.865e-2230.992-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_DROME2.694e-2131.86Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_PSEAE3.518e-2132.353-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
Y229_SYNY32.280e-2028.23Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
Y1503_SHEFN2.521e-1928.37Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
3HIDH_ARATH3.293e-1931.98Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YIHU_SHIFL6.866e-1729.38Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]

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Properties
Property NameValue
Genbank descriptionC34102B09EF PostHarvP1 Citrus clementina cDNA clone C34102B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931165 ID=FC931165; Name=FC931165; organism=Citrus clementina; type=EST; length=756bp
GGATTAAAGATTCTTGCTTTATCTAAGTTTGGACTCTGCTGAGAGTTGCA
AGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAAGA
TATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATTAT
GGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACTG
TATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGCT
ACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTAT
TGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAG
GTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTGCATTGACATGTCA
ACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAAA
AGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCAG
AAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGAT
GAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGG
GGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATGG
GCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGT
GGACTTGACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATTGC
TAATCC
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