FC931173

Overview
NameFC931173
Unique NameFC931173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:95..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931173 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 1 
Query:  289 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 687
            +  L GGVS  ++K+  AP+ERVK+L Q + +M         +  +    K  +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:   13 VTLLAGGVSGVIAKSTIAPLERVKILYQVKSKMYS-------FNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132
The following BLAST results are available for this feature:
BLAST of FC931173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MCFR_DICDI4.720e-1232.33Mitochondrial substrate carrier family protein R O... [more]

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Properties
Property NameValue
Genbank descriptionC34102C05EF PostHarvP1 Citrus clementina cDNA clone C34102C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931173 ID=FC931173; Name=FC931173; organism=Citrus clementina; type=EST; length=725bp
AATCTGTCATTTTTCAAAGGAAAAGTCACAATGATTGATCAGGTTCAACA
TCCTTCCGTCATGCAGAAGGTAGCTGGACAGCTCCTTCATTCCAGCCTTT
CCCAAAATATTCAGGATTATGAAAGGCCAACCATGTACCAAAGACGTGGT
GCTTATGGGAACTACTCCAATGCTGCATTCCAATACCCCATAGTCAGTGC
AGCTACAACCGATCTATCTATGGTGCCGTCAACTGCATCTGCTATTTGCG
TCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTGCTATCGATTTCCTT
ATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCTGCTGCTCCCATTGA
GCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGATGATCAAGAGTGGTA
GGCTATCTGAACCCTACAAGGGCATTGGTGATTGTTTTAAGCGTACAATG
AAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAATACCGCTAATGTTAT
CCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATTCAAGGATTACTTCA
AGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTT
GCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCTTCATCCCTTCTCTT
TGTTTACTCCTTGGACTATGCTCGTACCCGTCTGGCCAATGATGCCAAGC
TGCGAAGAAGGAGGGAGAGAGCATT
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