FC931174

Overview
NameFC931174
Unique NameFC931174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931174_ssr632 microsatellite FC931174_ssr632:632..643. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.567e-27
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   60 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFTRLC-SPVLID 293
            D LPEDC ++I+S+TSPRD C  + VS +   A   D++WEKFLP +Y  ++P      V+ SKK+L+  LC  PVL++
Sbjct:   46 DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPW---RVFSSKKDLYFTLCYDPVLVE 121          

HSP 2 Score: 71.2478 bits (173), Expect = 1.567e-27
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  295 KTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSL 579
            K+F LE ++ KK  +L A+EL IT  NNP YW W    +S F +V EL      Q+ G ++T+ +S  T Y+ Y++ K  +   GL  LP +V +
Sbjct:  125 KSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGV 219          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-25
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  298 TFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNG-SXQSQGTAYLRWQERKIQ 648
            +F L+K++ KK  +L A++L I+   NP YW W    +SRF EV EL  I    I G +NT+ ISP T Y+AY++        G  + P    ++ G G         ++R+  +K Q
Sbjct:  116 SFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSP----IQAGVGFQRHGMSKTFIRFDSKKRQ 229          

HSP 2 Score: 67.0106 bits (162), Expect = 1.388e-25
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   60 DLLPEDCFAHILSYTS-PRDACRLSLVSSTVRFAADSDNVWEKFL-PVDYMEILPRLVLPLVYFSKKELFTRLCSP 281
            D LP+DC A I S+TS PRDA   +LVS +     +SD+VWEKFL P DY+ +LP+     V+ SKKEL+  LC P
Sbjct:   35 DDLPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPK---SRVFSSKKELYFALCDP 107          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-20
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   66 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFTRLC 275
            LPE+C + I+S+TSPRDAC  +LVS T   A  SD VWEKF+P +Y  +L R      + SKKELF  LC
Sbjct:   43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSR---SQHFSSKKELFFALC 109          

HSP 2 Score: 46.9802 bits (110), Expect = 3.276e-20
Identity = 27/86 (31.40%), Postives = 47/86 (54.65%), Query Frame = 1
Query:  295 KTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTE-VAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFG 549
            K   +EK+T K+  +L A  L+++  +    W W     S + E V EL T  W +I  + NT+ +SP+T+Y+ Y++   A+  +G
Sbjct:  120 KDLWIEKATGKRCMMLSASALNLSTHHT---WKWITNPVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYG 202          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.548e-20
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:   57 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFTRLCSPVLIDQD 299
            +D LPE C ++I+S+TSP DAC  + VS     A  SD VWEKFLP DY  +   +    V+ SKKEL+  LC+  L+ +D
Sbjct:   24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESL---ITPSRVFSSKKELYFSLCNDPLLIED 101          

HSP 2 Score: 46.2098 bits (108), Expect = 5.548e-20
Identity = 30/102 (29.41%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  307 LEKSTSKKRYILGARELSIT-WANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE-VGNGSXQS 606
            LEK++ K+  +L A  ++++  A+    + W P  +SRF  VA LR     +   ++NT+ +S +T+Y+ Y++ K A+   G   +  E  +  VG  S +S
Sbjct:  108 LEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEESFRS 209          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.635e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   60 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFTRLCS-PVLID 293
            D LPE+C ++I+S+T+PRDAC  + VS     A  SD+VWEKFLP+DY  ++P      V+ SKKEL   LC  P+LI+
Sbjct:   14 DGLPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLVPE---SRVFLSKKELCFSLCRVPLLIE 89          

HSP 2 Score: 27.335 bits (59), Expect = 1.635e-15
Identity = 10/31 (32.26%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  295 KTFSLEKSTSKKRYILGARELSITWANNPLY 387
            K+F L+K++ +K  +L  + + I+W N+P +
Sbjct:   93 KSFWLDKTSGEKCIMLSPKGMVISWVNSPQF 123          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.741e-15
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   66 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY--FSKKELFTRLCSPVLIDQD 299
            +PE C A +  Y +P + C L+ ++ + R AA SD+VWEK LP +Y ++L  L+ P  Y   SKK++F  L  P+  D D
Sbjct:   24 IPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLD-LLPPERYHSLSKKDIFAVLSRPIPFDDD 102          

HSP 2 Score: 41.9726 bits (97), Expect = 5.741e-15
Identity = 19/56 (33.93%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  307 LEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKI 474
            +++ T +    + AR +SIT   +  YW W P  +SRF  VA L+ I W ++ G +
Sbjct:  108 IDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTV 163          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.476e-11
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 3
Query:   66 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRL--------VLPLVYFSKKELFTRLCSPVLID 293
            +PE+C   +  Y  P + C L+ V+ +   A+ SD VWE  LP +Y  ++ R+        V   + + KKE++ RLC P L D
Sbjct:   24 VPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFD 107          

HSP 2 Score: 36.1946 bits (82), Expect = 2.476e-11
Identity = 20/61 (32.79%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  292 TKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKI 474
            TK   L+K + K    +  + + IT  ++  YW      +SRF  +  LR I WL+  GKI
Sbjct:  110 TKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKI 170          
BLAST of FC931174 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.215e-11
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 3
Query:   66 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV--LPLVYFSKKELFTRLCSPVLID 293
            LPE+C A I++   P + CRL+ ++   R A+ +D +WE  LP +Y  I  ++   + L    KK+L+ +L  P L D
Sbjct:   28 LPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFD 105          

HSP 2 Score: 36.5798 bits (83), Expect = 3.215e-11
Identity = 19/82 (23.17%), Postives = 41/82 (50.00%), Query Frame = 1
Query:  292 TKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAE 537
            TK   ++K+T +    + ++ L IT  ++  YW+  P  +SRF   A ++ I W ++ G+   +   P   Y+ +  ++  +
Sbjct:  108 TKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQ--FPSGTYSLFFRIQLGK 187          
The following BLAST results are available for this feature:
BLAST of FC931174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PP2B6_ARATH1.567e-2745.57Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B5_ARATH1.388e-2533.90F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
PP2B7_ARATH3.276e-2052.86F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
SKIP3_ARATH5.548e-2045.68F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
PP2B3_ARATH1.635e-1549.37F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
P2A15_ARATH5.741e-1540.00F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH2.476e-1133.33F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH3.215e-1134.62F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC34102C06EF PostHarvP1 Citrus clementina cDNA clone C34102C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931174 ID=FC931174; Name=FC931174; organism=Citrus clementina; type=EST; length=708bp
GACAACACATAAGCTGCAAGACATTAAGTAAAAGAAGAAAAAAGAAAAAA
ATGAACGTAGATCTGCTGCCTGAAGATTGTTTTGCTCACATTTTATCATA
CACATCTCCTAGAGATGCGTGCCGGCTTTCGCTTGTCTCGTCGACGGTAC
GATTTGCGGCCGATTCCGACAATGTGTGGGAGAAATTTTTGCCGGTTGAT
TATATGGAAATTCTCCCAAGATTAGTGTTGCCGCTGGTGTACTTTTCTAA
GAAAGAGCTGTTTACGAGGTTATGTAGCCCAGTTCTAATTGACCAAGACT
TTTTCCTTAGAGAAATCAACGAGCAAGAAACGTTACATTCTAGGTGCAAG
AGAACTTTCAATTACGTGGGCAAACAATCCTCTCTATTGGACCTGGAAAC
CCTTCCTTCAGTCAAGATTTACAGAAGTAGCCGAACTTAGAACCATTAGT
TGGCTACAAATAACTGGTAAAATAAACACCAAAACCATATCACCAAAAAC
ACAATACGCTGCCTACCTCATCGTTAAATTTGCCGAGAGAGCTTTCGGAT
TAGACTCGTTGCCATCAGAAGTATCACTTGAAGTTGGTAATGGCAGCTTN
CAGTCACAAGGGACAGCTTATTTGCGTTGGCAAGAAAGAAAGATACAGTT
AGAATGTCTAGGGCATCTGTACTTTTTGCATCGCGATGAAGCTCTGAGAT
CTAGGGTT
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