FC931175

Overview
NameFC931175
Unique NameFC931175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:5..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931175 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 64/231 (27.71%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   22 TNSPAIATFVSLLVTLSLIKASQGAGGIVIYWGQNGNEGTLTSTCATSKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 648
            TN  A    VS L   SL         + +YWGQ   +  L+  C  + +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:    4 TNILAAFIAVSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC931175 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 64/231 (27.71%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   22 TNSPAIATFVSLLVTLSLIKASQGAGGIVIYWGQNGNEGTLTSTCATSKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 648
            TN  A    VS L   SL         + +YWGQ   +  L+  C  + +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:    4 TNILAAFIAVSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC931175 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   97 GGIVIYWGQNGNEGTLTSTCATSKYAYVNIAFLNKFGNGQTPEINLA 237
            GGI IYWGQNGNEGTLT TC T KY+YVNIAFLNKFGNGQTPEINLA
Sbjct:    1 GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of FC931175 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 61/216 (28.24%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   52 SLLVTLSLIKASQGAGGIVIYWGQN-------GNEGTLTSTCATSKYAYVNIAFLNKFGNGQTPEINLAGHCNPA---AGG----CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLA-RFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNT 651
            S  + LSL   +Q A  ++ YWG N        ++  L+S C  + Y  + ++ +  F     P  + +  C+ +   +G     C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G+   +   A R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N+
Sbjct:   13 SARLALSLNLTNQTA--VLGYWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNS 226          
The following BLAST results are available for this feature:
BLAST of FC931175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI2_COCP71.033e-1927.71Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM1.033e-1927.71Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
CHLY_PARTH8.741e-1989.36Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
YKT4_SCHPO9.046e-1628.24Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34102C07EF PostHarvP1 Citrus clementina cDNA clone C34102C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931175 ID=FC931175; Name=FC931175; organism=Citrus clementina; type=EST; length=717bp
GGCATAATTGCAGAAATGGCCACAAACTCTCCAGCAATAGCAACATTCGT
CTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCCGGCG
GCATCGTAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCACTTCA
ACCTGTGCCACAAGCAAATATGCTTATGTCAACATAGCTTTCCTGAACAA
GTTTGGCAACGGCCAGACCCCTGAAATTAACCTTGCCGGCCACTGCAACC
CTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTGTCAG
AGCCGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTAGCTA
CTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTGTGGA
ACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGCTGTG
TTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATTGGGA
TGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAAGTTT
ACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGGTGCT
GCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACAACAC
CCACCTTGTCAGTATAGTTCACGAAATACCCAGAATCTTATAGTTCATTT
ACAGATGGGCTTCATCA
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