FC931176

Overview
NameFC931176
Unique NameFC931176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig652 contig Ccv1_Contig652:85..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 61/173 (35.26%), Postives = 77/173 (44.51%), Query Frame = 1
Query:  172 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP 672
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++   G+V+      +D    SH GC P
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVS---GGLYD----SHVGCRP 181          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 61/175 (34.86%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  172 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE 669
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+     Y    GC   + P CE
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGL--YDSHVGCRAYTIPPCE 188          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 44/102 (43.14%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  319 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT 615
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V  G  T
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLVKSGFCT 169          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  352 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT 615
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVT 173          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 1
Query:  352 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPY 633
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI         +SV                  Y I A R++   G VT        C PY
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPY 193          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 1
Query:  337 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY 678
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G +  Y
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYY 202          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 1
Query:  337 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY 678
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G +  Y
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYY 202          
BLAST of FC931176 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 38/102 (37.25%), Postives = 49/102 (48.04%), Query Frame = 1
Query:  352 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPY 633
            +P +FD+R+ W +C +I  I DQ  CGSCWAFGA E +SDR CI         +S +                 YPI A R++   GVVT        C PY
Sbjct:   85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPY 186          
The following BLAST results are available for this feature:
BLAST of FC931176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CATB_PIG1.799e-1835.26Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_CHICK1.799e-1834.86Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR4_CAEEL2.688e-1443.14Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR5_CAEEL4.586e-1443.48Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR3_CAEEL5.606e-1239.22Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CYSP2_HAECO7.321e-1232.52Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CYSP1_HAECO7.321e-1232.52Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
CPR1_CAEEL6.198e-1137.25Gut-specific cysteine proteinase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC34102C08EF PostHarvP1 Citrus clementina cDNA clone C34102C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931176 ID=FC931176; Name=FC931176; organism=Citrus clementina; type=EST; length=686bp
AAACAAGAAAAGTGCTCTCTCCCATTTCTCCTCTCTTCGTCCTTCCCGAG
CCAGTCATCCATGGCTTCATCTCACCTCTTTCTTACTACATGTTTGTTAA
TTCTTGGCGTTATCTCCTCCCAGACTTTTGCAGAGGGAGTGGTTTCCAAG
CTCAAGCTTGATTCTCATATTCTCCAGGATTCAATCATCAAAGAAGTGAA
TGAGAACCCTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCAATTTTCCA
ATTACACTGTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGCCAACACCT
AAAGGGCTGCTCTTGGGTGTCCCTGTTAAAACTCATGACAAATCCTTGAA
GTTGCCTAAAAGCTTTGATGCAAGGTCCGCTTGGCCACAATGCAGCACCA
TTAGTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGT
GCTGTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGGCATGAACCT
ATCTCTATCAGTTAATGATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAG
ATGGTTGTGACGGGGGTTATCCAATTTCTGCATGGCGATACTTTGTCCAC
CATGGTGTTGTTACCGAAGAGTGTGATCCCTACTTTGATAGTACTGGCTG
TTCCCACCCTGGTTGTGAGCCGGCATATCCTACTCC
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