FC931181

Overview
NameFC931181
Unique NameFC931181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931181_ssr561 microsatellite FC931181_ssr561:561..572. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:4..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 93/228 (40.79%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   43 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            V  K   L  +  G+P  SD ++ T  +    P      VLL+ L+L+ DPYMR    +L +         G+ + G  V+KV++S +    K  +V     W  +S I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P+G D Y
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHS-ISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCY 214          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 94/228 (41.23%), Postives = 128/228 (56.14%), Query Frame = 1
Query:   43 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            V  K   L  +  G P +SD ++ T    +++P      VLL+ L+LS DPYMR    +L +         G  + G  V++V++S +  +    +V   + W  +  I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+  P+G D Y
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKT----VELPPLKNGEVLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCY 214          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 72/218 (33.03%), Postives = 115/218 (52.75%), Query Frame = 1
Query:   82 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNV---PLSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + + G GV  + +S H N+ K D V     W   + +    ++++ +D  +    LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G L GQ  +L+GC  VVG  G+ EK   L ++ GFD A NY KE ++   L +  P G+D+Y
Sbjct:   16 GHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSF-YWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINY-KEGNVAEQLHKLCPAGVDVY 228          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 1
Query:  160 VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            V ++ LYLS DPYMR RM++     ++  +   + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G + GQ   L+GC  VVG  G+ EK  LL ++ GFD A NYKK+ ++   L+   P G+D+Y
Sbjct:   39 VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVY 228          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  160 VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            V ++ LYLS DPYMR RM++     ++  +   + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G + GQ    +GC  VVG  G+ EK  LL ++ GFD A NYKK+ ++   L+   P G+D+Y
Sbjct:   39 VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVY 228          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 72/218 (33.03%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   82 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++A +   +   G G+  + +S H    K D V      W+  +++     L K+    V   LSY+ G +GMPGLT+  G+ E    S    + + VS A+GA G L GQ   L+GC  VVG  G+ EK   L ++ GFD A NY K  ++   L+   P+G+D+Y
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDG-NGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNY-KTGNVAEQLREACPDGVDVY 228          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   82 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIY 717
            G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++A +   +   G G+  V +S H    K D V      W+  +++     L K+    V   LSY+ G +GMPGLT+  G+ E    S    + + VS A+GA G L GQ   L+GC  VVG  G++EK   L ++ GFD A NY K  ++   L+   P G+D+Y
Sbjct:   16 GNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDG-NGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNY-KTGNVAEQLREACPGGVDVY 228          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 59/197 (29.95%), Postives = 93/197 (47.21%), Query Frame = 1
Query:  136 VPEGSKDTVLLKNLYLSCDP----YMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDI 714
            VP      +L++N ++  +     Y  GR     KP F   F     +   G+S    S      +        S+ EY+++ +    I I   +V   Y T ++   G TAY  L EL    +G+ V V+AA+G  GQ   Q +K+  C+V+G+  S EK   LK+  G D   NY+ EP ++  LK+ +PEG+D+
Sbjct:   57 VPLPGDGDLLVRNRFVGINASDINYSAGRYDPSLKPPFDIGFEGIGEVVALGLSA---SARYTVGQAVAYMAPGSFAEYTVVPAS---IAIPMPSVKPEYLTMLVS--GTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFLKS-IGCDRPINYRTEP-VETVLKQEYPEGVDV 243          
BLAST of FC931181 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 1
Query:  112 ITGSINLKVPEGSKDTVLLKNLYLSCDP----YMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDI 714
            +T S +  VP      +L++N ++  +     Y  GR     KP F   F     +   G+S    S      +        S+ EY+++ +    I     +V   Y T  L + G TAY  L EL    +G+ V V+AA+G  GQ   Q +K   C+V+G+  S EK   LK+  G D   NYK EP +   LK+ +PEG+D+
Sbjct:   49 VTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSA---SARYTVGQAVAYMAPGSFAEYTVVPAS---IATPVPSVKPEYLT--LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDV 243          
The following BLAST results are available for this feature:
BLAST of FC931181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PTGR1_HUMAN8.701e-3540.79Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_CAVPO8.701e-3541.23Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR2_BOVIN7.640e-2333.03Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB2.903e-2235.60Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN8.447e-2235.08Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT9.339e-2133.03Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE1.593e-2033.49Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
ZADH2_MOUSE6.068e-1229.95Zinc-binding alcohol dehydrogenase domain-containi... [more]
ZADH2_HUMAN3.011e-1130.24Zinc-binding alcohol dehydrogenase domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC34102D01EF PostHarvP1 Citrus clementina cDNA clone C34102D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931181 ID=FC931181; Name=FC931181; organism=Citrus clementina; type=EST; length=719bp
ATCAAAACAAAATCTACATACAAAATGGCGGGTGAAGAAGCAGTGAGCAA
CAAGCAGGTGATTCTGAGCAACTACGTGACAGGGTTTCCCAAGGAATCAG
ACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGGCTCA
AAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTACAT
GAGAGGACGTATGAGTAAGCTTGATAAGCCTTCGTTTGTTGCCTCCTTCA
ACCCTGGCGAGCCCTTGAGCGGATATGGAGTGTCCAAAGTGTTGGATTCC
ACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAGTTG
GGAGGAGTACAGTCTCATCCAATCACCACAACATCTGATTAAAATTCTGG
ATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCTGGT
TTGACTGCATATGGTGGTTTATATGAGCTTTGCTCTCCTAAGAAAGGAGA
GTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTAGTTGGGC
AATTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAAGTGCAGGAAGCAAA
GAAAAGGTCAATCTGTTGAAGAACAAGTTTGGGTTTGATGATGCTTTTAA
CTATAAGAAAGAGCCAGACTTGGATGCAGCTCTTAAGAGGTGCTTTCCTG
AAGGCATCGACATCTATTT
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