FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLL2 (10 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++KPL DRV+VK    EEKT GG+F+P T + KPQ GEVVAVG GK     + LD+ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEVNVEGEDYLIMRESDIFAILD 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GEVVAVG GK     + L++ VK G++V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I+PL DR++VK    E KT GG+F+P TA+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++ +G  HLILRE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  +   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDRV+++    EEKT  GI LP TA+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  +LILRE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DR+LVK    E KT GGIF+P TA+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++P+ DR++VK    E KT GGI++P TA+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 553
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G ++++L E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_CLOPE4.468e-2051.6110 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP14.468e-2051.6110 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CHLL24.468e-2051.0610 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH10_PELPB5.836e-2050.5410 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_MYXXD5.836e-2049.4610 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]
CH10_CLOPS5.836e-2050.5410 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_BACHD5.836e-2053.2610 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_GEOSL7.622e-2048.9410 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF7.622e-2049.4610 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_CYAA57.622e-2050.5510 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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