FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ  EVVAVG G  V   ++ + VK G +VI SKYAGTE++F+G  + ILR++D++ ++E
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQNDILAVVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 553
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVVAVG GK     ++  I VK G +V+YSKYAGT+++  G ++++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDIL 99          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOBB (10 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V  TK+++ VK G +V+YSKY+GTE++ +G  ++IL++DD++ I+E
Sbjct:    3 IKPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOBA (10 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V  TK+++ VK G +V+YSKY+GTE++ +G  ++IL++DD++ I+E
Sbjct:    3 IKPLGNRVVIKRLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLP8 (10 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GEVVAVGEGK     +L  + VK G +V+Y KY+GTE++    ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQVEAEDYLIMRESDIFAIL 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 47/91 (51.65%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 553
            +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ GEVVAVGEGK     ++  + VK G +V+YSKYAGT+++ +G ++++L E D++
Sbjct:    9 STLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLSGDDYVLLSEKDIL 99          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CALS8 (10 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I+P+GDR+L+K K  EE T  GI LP T + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ANATD (10 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I+P+GDR+L+K K  EE T  GI LP T + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  +LILRE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G ++++L E D++ +++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_CLOTH7.622e-2050.5410 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH10_CYAP79.954e-2052.7510 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_CLOBB9.954e-2050.0010 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBA9.954e-2050.0010 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CHLP89.954e-2050.5410 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH10_SYNP21.300e-1951.6510 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_CALS81.300e-1950.0010 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH10_ANATD1.300e-1950.0010 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH10_OCEIH1.698e-1948.3510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH10_CYAP81.698e-1947.3710 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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