FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 44/94 (46.81%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ VK G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTEEYVLLSEKDILAVV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK     T+ ++ VK G +V+YSKYAGT+++  G  +++L E D++ I+
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 553
            T++KPLGDRV VK+   EEKT GGIFLP  A+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G   ++L E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACSK (10 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDR++++    EEKT  GI LP +A+ KPQ G+VVAVG G+ T    K+ + VK G  +I+SKYAGTE+++ G  +LILRE DV+ I+
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVKYEGTEYLILRESDVLAII 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PROA2 (10 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GE+VAVG GK     + L++ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEIVAVGTGKVAENGQVLEMQVNIGQKVLYGKYSGTEVTVEGEDYLIMRESDIFAILD 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACAC (10 kDa chaperonin OS=Lactobacillus acidophilus GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 559
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG  T    KL + VK G  V+Y KY+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKEEEEKTVGGIVLASNAKQKPTEGEVVAVGEGAYTSNGDKLPMVVKKGDVVLYDKYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLONN (10 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V++SKY+GTE++ +G  + ILR++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVRMEVKVGDKVLFSKYSGTEVKLDGEEYTILRQNDILAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++++ VK G +V++S+YAG E++ +G  ++ILR++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQNDILAIVE 94          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_ANASP3.783e-1946.8110 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]
CH10_TRIEI4.940e-1947.8710 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_MICAN4.940e-1951.6510 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_BACSK4.940e-1951.0910 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH10_THEVL6.452e-1948.9410 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB6.452e-1948.9410 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROA26.452e-1947.8710 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH10_LACAC6.452e-1952.7510 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH10_CLONN6.452e-1948.9110 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH10_CLOBO6.452e-1947.8310 kDa chaperonin OS=Clostridium botulinum GN=groS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
back to top