FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 559
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOTN (10 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOSW (10 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G VVAVG+G+ +   + +   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGECVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOKA (10 kDa chaperonin OS=Geobacillus kaustophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    1 MKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_TETHA (10 kDa chaperonin OS=Tetragenococcus halophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLGDRVL+++   EEKT GGI L STAQ KPQ G+VVAVG G+T+   +L  + V  G  V++ KYAG+E++++G +++I    D+V I+E
Sbjct:    2 LKPLGDRVLIEVSEEEEKTVGGIVLASTAQEKPQTGKVVAVGPGRTLDNGELATVPVNVGDTVLFEKYAGSEVKYDGQDYMIFSAKDLVAIVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 553
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     T   + VK G +V+YSKYAGT+++  G ++++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_PELPD (10 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PL DR+LVK    E KT GG+F+P TA+ KPQ GEVVA G GK     K L + VK G +V++ KY+GTE++ +G + L++REDD++ ++E
Sbjct:    3 LRPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVKVDGEDFLMMREDDILAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPL DRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_LACH41.101e-1850.5510 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH10_GEOTN1.101e-1846.7410 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH10_GEOSW1.101e-1847.8310 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH10_GEOKA1.101e-1846.7410 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH10_BACSU1.101e-1845.6510 kDa chaperonin OS=Bacillus subtilis GN=groS PE=... [more]
CH10_BACA21.101e-1845.6510 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH10_TETHA1.437e-1849.4610 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]
CH10_SYNY31.437e-1850.5510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_PELPD1.437e-1848.3910 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH10_NOSP71.437e-1844.6810 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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