FC931234

Overview
NameFC931234
Unique NameFC931234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.554e-20
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  218 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINRVLLKL 658
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI + ++++
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEI 161          

HSP 2 Score: 28.1054 bits (61), Expect = 2.554e-20
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +G VEI+T  +++  GDKV +S A LL
Sbjct:  156 KGMVEIVTEKKVLSVGDKVDNSTATLL 182          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-18
Identity = 51/152 (33.55%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  188 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINR 643
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI +
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITK 171          

HSP 2 Score: 33.8834 bits (76), Expect = 4.905e-18
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  640 QGTVEIITPVELIRKGDKVGSSEAALL 720
            +G VEII+P +++ +GDKVG S+A LL
Sbjct:  171 KGKVEIISPYKVLSEGDKVGPSQANLL 197          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  233 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 592
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDP 135          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  233 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 592
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDP 135          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 2
Query:  236 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDP 592
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDP 134          
BLAST of FC931234 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  200 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINR 643
            A  AE K     +L +LL++Y  I +    +V +  L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I +
Sbjct:    2 AHVAEWKKKEVEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEK 150          
The following BLAST results are available for this feature:
BLAST of FC931234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RLA0_LEIIN2.554e-2033.7760S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU4.905e-1833.5560S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_HALSA2.724e-1235.83Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS32.724e-1235.83Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_NATPD6.708e-1132.77Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_THESM8.761e-1130.20Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34103A01EF PostHarvP1 Citrus clementina cDNA clone C34103A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931234 ID=FC931234; Name=FC931234; organism=Citrus clementina; type=EST; length=720bp
GAGCCTCCCAGATAATACTAGGGTTTTTCTTGTACACTTCTTTCACTCTC
TTTGTATCTCGTTGAGGTTAAAGAGACGGCAACTCCGCTGCTGTCCGCCT
TGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAAC
TTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAG
CATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTG
CTGGAAGAGTACACCCAAATCTTGGTGGCGGCCGCCGACAACGTGGGGTC
CAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGC
TAATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCTGAG
AAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAA
TGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGG
TTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCA
ATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGAC
CTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAGGGTACTGT
TGAAATTATCACACCTGTGGAGCTTATCAGGAAGGGTGACAAGGTGGGAT
CTTCTGAGGCAGCCCTGCTT
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