FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:   28 KNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            KN  ++ +    K+VV               RV    + Y + L LP K+DP V +M+VE+ PD TY  +GG  +QI+ ++EV+ELP+  PE F  LGI  PKG++LYGPPGTGKTL ARAVA+ TD TFIRV GSELVQKY+GEG+RMVRELF MAR     IIF DEID+IG AR + G+G GD+EVQRTMLEL+T L
Sbjct:  112 KNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELITQL 310          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 137/198 (69.19%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            + L+ V    K+VV               RV +  + Y +HL LP+K+DP V +M+VE+ PD TY  +GG   QI++++EV+E P+ HPE + +LGI  PKGVLLYGPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID++G AR + G G GD+EVQRTMLEL+  L
Sbjct:  112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQG-GDNEVQRTMLELINQL 308          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQL 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.115e-54
Identity = 106/209 (50.72%), Postives = 143/209 (68.42%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            VG + +++  N  +V      ++ V            P   V L +  + +  +L    DP+V +MK+EK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EHAPSI+F+DEID++G+ R +S SG G+ E+QRTMLELL  L
Sbjct:  108 VGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQL 315          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.902e-54
Identity = 107/209 (51.20%), Postives = 142/209 (67.94%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MK+EK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EH PSI+F+DEID+IG+ R +S SG G+ E+QRTMLELL  L
Sbjct:  109 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQL 316          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS7_XENLA1.115e-5454.5526S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_SCHPO1.115e-5455.0026S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7_PONAB1.115e-5454.5526S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_MOUSE1.115e-5454.5526S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA1.115e-5454.5526S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN1.115e-5454.5526S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_CAEEL1.115e-5454.5526S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_BOVIN1.115e-5454.5526S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS4_DROME1.115e-5450.7226S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_CHICK1.902e-5451.2026S protease regulatory subunit 4 OS=Gallus gallus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
back to top