FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.610e-53
Identity = 110/232 (47.41%), Postives = 156/232 (67.24%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHG-DNXIDILDQ 693
            +G V  ++ +N+V+V+     +++V            P  R  L   S  +  ILP+  D  +  M+V + P   Y+ IGGL++QI EI+E +ELP+K PE+F  +GI  PKGVLL+GPPGTGKTLLARAVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ +PSIIF+DEID+IG++R ES + +GD EV RT+++LL  +    ++  +   G  N IDILD+
Sbjct:   77 IGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNT-SGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDR 307          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.685e-53
Identity = 117/221 (52.94%), Postives = 144/221 (65.16%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            K +V +   GKYVV               RV +    Y + + LP K+DP V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+ HPE F  LGI  PKGVL YGPPG+GKTL+ARAVA+ T   FIRV GSELVQKYIGEG+RMVRELF MAR     I+F DEID+IG AR + G G+ D+EVQRTMLE+L  L   D +   K+     N  DILD
Sbjct:  140 KYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGS-DNEVQRTMLEILYQLDGFDARGNIKV-LMATNRPDILD 358          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.119e-53
Identity = 111/232 (47.84%), Postives = 154/232 (66.38%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHG-DNXIDILDQ 693
            +G VV V+  N+V+V+     +++V            P  R  L   S  +  +LPS  D  V  M++   P   Y  IGGL +QI E++E +ELP+K PELF  +GI  PKGVLLYGPPGTGKTLLA+AVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ AP+IIF+DEID++G++R E+ + +GD EVQRT+++LL  +   + +  +   G  N IDILD+
Sbjct:  102 IGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANT-SGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDK 332          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 112/231 (48.48%), Postives = 160/231 (69.26%), Query Frame = 1
Query:    4 GEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            G V++V+ +++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL  +   D +   K+ +   N  DILD
Sbjct:   65 GTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIA-ATNRPDILD 293          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 111/231 (48.05%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    4 GEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            G V++V+  ++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ R++  +G G+ EV RT+++LL  +   D +   K+ +   N  DILD
Sbjct:   62 GSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIA-ATNRPDILD 290          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 104/198 (52.53%), Postives = 137/198 (69.19%), Query Frame = 1
Query:   34 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            K ++ V    K+VV               RV +  + Y + + LP K+D  V +M+VE+ PD TY  +GG  +QI++++EV+E+P+ HPE F +LGI  PKGVL+YGPPGTGKTL ARAVA+ TD  F+RV GSELVQKY+GEG+RMVR+LF MAR     IIF DE+D+IG AR + G+G GD+EVQRTMLEL+  L
Sbjct:  105 KYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAG-GDNEVQRTMLELINQL 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 111/231 (48.05%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    4 GEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            G V++V+   + +V+ +   ++VV            P  RVAL   +  +  +LPS+ DP V   +V + P  TY+ IGGL++Q++E++E IELP+KHPELFE +GI  PKGVLLYGPPG GKTL+A+AVA+H + TFIRV GSELV+K+IGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL  +   D +   K+ +   N  DILD
Sbjct:   63 GNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIA-ATNRPDILD 291          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 109/220 (49.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKL 654
            VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+ +PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELL  +   D  H+ K+
Sbjct:   57 VGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKM 275          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 109/220 (49.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKL 654
            VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+ +PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELL  +   D  H+ K+
Sbjct:   57 VGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKM 275          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 109/220 (49.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKL 654
            VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+ +PELF+ +GI  PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELL  +   D  H+ K+
Sbjct:   57 VGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKM 275          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PSMR_METPE1.610e-5347.41Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS7B_ARATH4.685e-5352.9426S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_METB66.119e-5347.84Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_PYRHO7.992e-5348.48Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRFU7.992e-5348.05Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS7_DICDI7.992e-5352.5326S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_PYRKO1.780e-5248.05Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS10_SPETR1.780e-5249.5526S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.780e-5249.5526S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.780e-5249.5526S protease regulatory subunit S10B OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
back to top