FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.358e-51
Identity = 106/232 (45.69%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL  +   D +   K+ +   N  DILD
Sbjct:   72 LGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIA-ATNRPDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.358e-51
Identity = 106/232 (45.69%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL  +   D +   K+ +   N  DILD
Sbjct:   72 LGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIA-ATNRPDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.385e-51
Identity = 106/232 (45.69%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL  +   D +   K+ +   N  DILD
Sbjct:   72 LGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIA-ATNRPDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.385e-51
Identity = 106/232 (45.69%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL  +   D +   K+ +   N  DILD
Sbjct:   72 LGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIA-ATNRPDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.727e-51
Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLGSHG-DNXIDILD 690
            VG +  ++   +V+V+     +++V               R  L   S  +  +LPS  D  V  M++   P  TY+ IGGL++QI EI+E +ELP+  P+LFE +GI  PKGVLLYGPPGTGKTLLA+AVAH T   F+   GSELVQKYIGEG+R+VRELF +A+E APSI+F+DEID+IG++R E+ + +GD EVQRT+++LL ++   + +  +   G  N IDILD
Sbjct:   77 VGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMT-SGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILD 306          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.276e-50
Identity = 101/209 (48.33%), Postives = 144/209 (68.90%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T+ TFIRV GSELVQKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL  +
Sbjct:   83 IGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEM 290          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.176e-50
Identity = 101/209 (48.33%), Postives = 144/209 (68.90%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T+ TFIRV GSELVQKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL  +
Sbjct:   83 IGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEM 290          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.842e-50
Identity = 99/209 (47.37%), Postives = 142/209 (67.94%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            +G + +++  +  +V       Y V            P   V L + +  +  +L    DP+V++MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI+F+DEID+IG+ R +S SG G+ E+QRTMLELL  L
Sbjct:  106 IGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQL 313          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.842e-50
Identity = 96/172 (55.81%), Postives = 130/172 (75.58%), Query Frame = 1
Query:  112 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            P   V L + +  +  +L    DP++N+MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G R+VR+LF  A EH+PSI+F+DEID+IG+ R ++ SG  + E+QRTMLELL  L
Sbjct:  152 PGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSG-AEREIQRTMLELLNQL 322          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.712e-50
Identity = 106/229 (46.29%), Postives = 151/229 (65.94%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QI+E++EV+ELP+K+PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L   D     K+ +   N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFDPLDNVKIIA-ATNRIDILD 287          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PSMR_METMP3.358e-5145.69Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM73.358e-5145.69Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM64.385e-5145.69Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM54.385e-5145.69Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METHJ5.727e-5146.75Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METMA1.276e-5048.33Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC2.176e-5048.33Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_YEAST2.842e-5047.3726S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_SCHPO2.842e-5055.8126S protease regulatory subunit 4 homolog OS=Schiz... [more]
PSMR_SULSO3.712e-5046.29Proteasome-activating nucleotidase OS=Sulfolobus s... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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