FC931252

Overview
NameFC931252
Unique NameFC931252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:338..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 VVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSLMDLKHQTKLG-SHGDNXIDILD 690
            V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL  L        +      N IDILD
Sbjct:   61 VLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILD 287          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.848e-50
Identity = 107/232 (46.12%), Postives = 154/232 (66.38%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +G V+  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD  +  IGGL+ QI++IKEV+ELP+K+PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA  T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL  +   D +   K+ +   N  DILD
Sbjct:   72 LGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIA-ATNRPDILD 301          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.270e-50
Identity = 102/179 (56.98%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  160 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKLGSHGDNXIDILD 690
            +L  ++DP+VN+MK+EK P  TY  IGGL++QI+EIKE +ELP+ +PEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV G+EL+Q+Y+GEG ++VRELF +A  HAPSIIF+DEID+IG  R  + SG G  EVQRTMLELL  L   D ++  K+     N I+ LD
Sbjct:  146 VLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGKRYNTSSG-GRREVQRTMLELLNQLDGFDTRNDIKV-IMATNKIEALD 322          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.080e-49
Identity = 102/209 (48.80%), Postives = 138/209 (66.03%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL 627
            VGEV+K + + K +VK     +YVV              TRV+L   +  +   LP +VDPLV  M  E   + +Y  +GGL +QI+E++EV+ELP+ +PELF+ +GI  PKG LL+GPPGTGKTLLARAVA   DC F++V  S +V KYIGE +RM+RE+F  AR+H P I+FMDEID+IG  R   G+ + D E+QRT++ELL  L
Sbjct:   74 VGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQL 281          
BLAST of FC931252 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.842e-49
Identity = 104/220 (47.27%), Postives = 143/220 (65.00%), Query Frame = 1
Query:    1 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLTSL--MDLKHQTKL 654
            +GEV+K +   + +VK     +YVV               RV+L   +  +  ILP +VDPLV  M +E   D ++  +GGL++QI+E++EVIELP+K+PELF  +GI  PKGVLLYGPPGTGKTLLARAVA      F++V  S +V KYIGE +R++RE+F  A+EH P +IFMDEID+IG  R   G+ + D E+QRT++ELL  +   D   QTK+
Sbjct:   56 IGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDYLGQTKI 274          
The following BLAST results are available for this feature:
BLAST of FC931252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PSMR_SULIY4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA4.848e-5046.05Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_METVS4.848e-5046.12Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_ENCCU8.270e-5056.9826S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS10_CAEEL1.080e-4948.80Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SCHPO1.842e-4947.27Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC34103B07EF PostHarvP1 Citrus clementina cDNA clone C34103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931252 ID=FC931252; Name=FC931252; organism=Citrus clementina; type=EST; length=767bp
GTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGT
TCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAGTATTGATATAA
CCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTT
CTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAA
GGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGATC
AGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACATCCC
GAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTATA
TGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGCTGTGGCTCATC
ATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAATTAGTCCAGAAA
TACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCAAG
GGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTATTGGAT
CTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAGTGAGGTGCAGAGG
ACTATGCTGGAGCTGCTCACCAGCTTGATGGATTTGAAGCATCAAACAAA
ATTAGGTTCTCATGGCGACAATCNGATTGATATTCTCGATCAGCTCTTCT
CAGCCAGACGAATGACAGAAGATGAATTTCAAAATCTATGAGAGCTCGTC
TGATATCTAAAAATCAT
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