FC931254

Overview
NameFC931254
Unique NameFC931254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931254_ssr35 microsatellite FC931254_ssr35:35..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15294 contig Ccv1_Contig15294:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 48/149 (32.21%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  248 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLTYSFSL 694
            C +AA  GL+FG D+GV  G  A+P    +F   +   TQ+                  SS+          + +            I  I F+AG  F+ AA N+ +LI+ R+LLG  VG A+   PL+LSEIAP +IRG +   + L
Sbjct:   19 CFLAALAGLLFGLDIGVIAG--ALPFIADEF--QITSHTQEW---------------VVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQL 148          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 48/149 (32.21%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  248 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLTYSFSL 694
            C +AA  GL+FG D+GV  G  A+P    +F   +   TQ+                  SS+          + +            I  I F+AG  F+ AA N+ +LI+ R+LLG  VG A+   PL+LSEIAP +IRG +   + L
Sbjct:   19 CFLAALAGLLFGLDIGVIAG--ALPFIADEF--QITSHTQEW---------------VVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQL 148          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 53/153 (34.64%), Postives = 68/153 (44.44%), Query Frame = 2
Query:  236 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLTYSFSL 694
            V V    A  GGL+FGYD GV  G             VV   +  G +       N G +  TS+  L  L     A              IA I  I G    V A +L  +IVGR ++G GVG A+  +PL+LSEIAP++IRG L   + L
Sbjct:   87 VWVLAFAAGIGGLLFGYDTGVISGAL-----------VVIGTSLGGHELT-----NGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVL 223          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  203 GVEFEA-KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGL 676
            G  FEA KI+  + V   +A   GL+FGYD GV  G  A+                 G D  +     Q  +L TS+   A L +   + +             A   F+ G     A++N+AM++VGR ++G G+G  +  VP++++E+AP R+RG L
Sbjct:   69 GEGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAV----------------LGSDLGHVLSSGQK-ELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRL 210          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 45/164 (27.44%), Postives = 72/164 (43.90%), Query Frame = 2
Query:  206 VEFEAKITPIVIVSCIMAATGGLMFGYDVG-VSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLTYSFSL 694
            + F   ++P +I    +A+  G MFGYD G +S  + ++                 G D ++        ++ T++  L  L  + FA               + + F+ G    V+A     + VGR+++G GVG  +   PLF+SEIAP  IRG LT   SL
Sbjct:   76 ITFNQSLSPFIITLTFVASISGFMFGYDTGYISSALISI-----------------GTDLDHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVINSL 222          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 46/150 (30.67%), Postives = 67/150 (44.67%), Query Frame = 2
Query:  230 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG-LTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGL 676
            P V+     A  GGL+FGYD GV  G      +++  F  V R T               LQ    S+ +AG +       +            +A   F+ G     AA N ++L+VGR+ +G GVG A+   PL++SE +P +IRG L
Sbjct:   26 PYVLRLAFSAGIGGLLFGYDTGVISGALL---YIRDDFKSVDRNTW--------------LQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGAL 158          
BLAST of FC931254 vs. ExPASy Swiss-Prot
Match: RCO3_NEUCR (Probable glucose transporter rco-3 OS=Neurospora crassa GN=rco-3 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 47/155 (30.32%), Postives = 69/155 (44.52%), Query Frame = 2
Query:  230 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLTYSFSL 694
            P ++V  +  ATGGL+ GYD G   G+ AM  F K  F   Y     G    Y K     + + ++   +  L A     +            I    F+ G    V A N+ +L+ GR + G G+G  +  VPL+ SE+AP  IRG L  ++ L
Sbjct:   20 PAIMVG-LFVATGGLLLGYDTGTINGILAMKSF-KDHFSTGYI-DGNGQPGIYPKESALIVAMLSAGTAIGALLAAPLGDHYGRRRSLIGAIGI----FVIGAILQVCAYNIDLLVAGRTVAGVGIGIVSVLVPLYQSEMAPKWIRGTLVCTYQL 167          
The following BLAST results are available for this feature:
BLAST of FC931254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GALP_ECOLI4.152e-1332.21Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL64.152e-1332.21Galactose-proton symporter OS=Escherichia coli O6 ... [more]
ITR1_SCHPO9.250e-1334.64Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
ITR2_SCHPO3.515e-1230.19Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
ITR1_YEAST1.744e-1127.44Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
INT2_ARATH3.886e-1130.67Probable inositol transporter 2 OS=Arabidopsis tha... [more]
RCO3_NEUCR8.658e-1130.32Probable glucose transporter rco-3 OS=Neurospora c... [more]

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Properties
Property NameValue
Genbank descriptionC34103B09EF PostHarvP1 Citrus clementina cDNA clone C34103B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931254 ID=FC931254; Name=FC931254; organism=Citrus clementina; type=EST; length=711bp
GTCTCATTATCACATACTTCATCTCACAATAATCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTACTTCTTCTTGTTCTTCT
TCGTAATTACGCTTAACGAGAGAATTAGAATTGGAATATCGTTTCAGTTT
TTGATAATTAAGGATGCCAGGTGGTGGATTCTCGGCGTCCGTGCCGCCGG
CCGGAGTCGAGTTTGAGGCCAAGATCACGCCGATTGTTATCGTTTCATGC
ATAATGGCCGCCACTGGAGGCCTCATGTTTGGCTACGATGTTGGTGTTTC
TGGGGGAGTGACGGCGATGCCACACTTCTTGAAGAAGTTCTTTCCAGTAG
TGTATAGGAGGACACAGCAAGGGGATGATAGCAATTACTGCAAGTACGAT
AATCAAGGGCTACAATTGTTCACATCATCCTTGTACTTGGCCGGCTTAAC
TGCCACCTTCTTTGCATCATACACAACTAGGAGGCTTGGCAGGAGGCTGA
CCATGCTGATTGCTGGTATCTTCTTCATTGCTGGTGTTGCCTTTAATGTT
GCTGCCCAGAACCTTGCCATGCTCATCGTTGGAAGGATCCTGCTTGGTTG
TGGGGTTGGTTTCGCTAATCAGGCTGTGCCATTGTTCCTATCGGAAATTG
CTCCNAACAGGATACGTGGAGGGCTTACATACTCTTTCAGCTTACGTCAC
ATCGGCATTCT
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