FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35 Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1206 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTKGEIQIDGVSWDSITLQEW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_RABIT (Cystic fibrosis transmembrane conductance regulator OS=Oryctolagus cuniculus GN=CFTR PE=2 SV=4) HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35 Identity = 75/224 (33.48%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++ L +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +Y+S Sbjct: 1205 WPSGGQMTVKGLTAKYIDSGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENTVRQYES 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35 Identity = 77/229 (33.62%), Postives = 126/229 (55.02%), Query Frame = 1 Query: 10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 R + WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP ++ D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1203 REDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQEW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1430
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUNRE (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus reevesi GN=CFTR PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35 Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUNMU (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus muntjak GN=CFTR PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35 Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_BOVIN (Cystic fibrosis transmembrane conductance regulator OS=Bos taurus GN=CFTR PE=2 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34 Identity = 75/224 (33.48%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F++CTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFANCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34 Identity = 76/224 (33.93%), Postives = 124/224 (55.36%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y VL IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP ++ D++IW+ ++ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1206 WPSGGQMTVKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTEGEIQVDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVAEEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLGKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1428
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34 Identity = 74/225 (32.89%), Postives = 124/225 (55.11%), Query Frame = 1 Query: 22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +WPS G++ ++DL +Y VL IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D ++W+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+ F+DCTVI HRI ++++ L++ + +Y+S Sbjct: 1201 NWPSGGQMTVKDLTAKYIDGGNAVLENISFSISSGQRVGLLGRTGSGKSTLLAAFLRLLNTQGDIQIDGVSWDSVPLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDAGCVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKNAFADCTVILSEHRIEAMLECQRFLVIEESKVRQYES 1424
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34 Identity = 73/225 (32.44%), Postives = 127/225 (56.44%), Query Frame = 1 Query: 22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +WPS G++ ++DL +Y P +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F G+ R N+DP ++TD+++W+ ++ L + + G+LD + + G S G RQL+CL R +L + KIL+LDE +A +D T +I+++L+Q F++CTVI HRI ++++ L++ + +Y+S Sbjct: 1205 NWPSGGQMTVQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLNTEGDIRIDGISWDAVPVQQW-RKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYES 1428
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33 Identity = 73/226 (32.30%), Postives = 124/226 (54.87%), Query Frame = 1 Query: 19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 ++WPS G++ ++DL +Y VL IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP +++D ++W+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I++ L+ F++CTVI HRI ++++ L++ + +Y+S Sbjct: 1204 NNWPSGGQMIVKDLTAKYTDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLAAFLRLLNTEGEMQIDGVSWDSIPLQKW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDGGYVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRVLKNAFANCTVILSEHRIEAMLECQRFLVIEDNKVRQYES 1428 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |