FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1206 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTKGEIQIDGVSWDSITLQEW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_RABIT (Cystic fibrosis transmembrane conductance regulator OS=Oryctolagus cuniculus GN=CFTR PE=2 SV=4)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 75/224 (33.48%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++ L  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +Y+S
Sbjct: 1205 WPSGGQMTVKGLTAKYIDSGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENTVRQYES 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 77/229 (33.62%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            R +  WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  ++ D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1203 REDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQEW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1430          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUNRE (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus reevesi GN=CFTR PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MUNMU (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus muntjak GN=CFTR PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_BOVIN (Cystic fibrosis transmembrane conductance regulator OS=Bos taurus GN=CFTR PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34
Identity = 75/224 (33.48%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F++CTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFANCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 76/224 (33.93%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      VL  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  ++ D++IW+  ++  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1206 WPSGGQMTVKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTEGEIQVDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVAEEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLGKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1428          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 74/225 (32.89%), Postives = 124/225 (55.11%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +WPS G++ ++DL  +Y      VL  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D ++W+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+  F+DCTVI   HRI ++++    L++    + +Y+S
Sbjct: 1201 NWPSGGQMTVKDLTAKYIDGGNAVLENISFSISSGQRVGLLGRTGSGKSTLLAAFLRLLNTQGDIQIDGVSWDSVPLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDAGCVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKNAFADCTVILSEHRIEAMLECQRFLVIEESKVRQYES 1424          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 73/225 (32.44%), Postives = 127/225 (56.44%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +WPS G++ ++DL  +Y    P +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F G+ R N+DP  ++TD+++W+  ++  L   + +  G+LD  + + G   S G RQL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F++CTVI   HRI ++++    L++    + +Y+S
Sbjct: 1205 NWPSGGQMTVQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLNTEGDIRIDGISWDAVPVQQW-RKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYES 1428          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 73/226 (32.30%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   19 HSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            ++WPS G++ ++DL  +Y      VL  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  +++D ++W+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I++ L+  F++CTVI   HRI ++++    L++    + +Y+S
Sbjct: 1204 NNWPSGGQMIVKDLTAKYTDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLAAFLRLLNTEGEMQIDGVSWDSIPLQKW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDGGYVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRVLKNAFANCTVILSEHRIEAMLECQRFLVIEDNKVRQYES 1428          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
CFTR_DASNO2.189e-3533.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_RABIT3.734e-3533.48Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUSPF3.734e-3533.62Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUNRE8.318e-3533.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUNMU8.318e-3533.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_BOVIN2.420e-3433.48Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PIG3.161e-3433.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_TRIVU7.042e-3432.89Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ORNAN7.042e-3432.44Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DIDMA4.564e-3332.30Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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