FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_RAT (Cystic fibrosis transmembrane conductance regulator OS=Rattus norvegicus GN=Cftr PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33 Identity = 74/225 (32.89%), Postives = 125/225 (55.56%), Query Frame = 1 Query: 22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +WPS G++ ++DL V+Y +L IS + ++ G++GRTGSGKSTL+ R++ R +I Q +F GT R N+DP ++ DE+IW+ D+ L + + G+L+ + + G S G +QL+CL R +L + KI++LDE +A++D T +I++ LRQ F+ CTV+ HRI +++D L++ G + +Y+S Sbjct: 1199 TWPSGGEMVVKDLTVKYVDDGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGEIQIDGVSWNSMTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWRDEEIWKVADQVGLKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSANLDPITYQVIRRVLRQAFAGCTVVLCEHRIEAMLDCQRFLVIEQGNVWQYES 1422
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32 Identity = 71/224 (31.70%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ + +L +Y VL+ +S + ++ G++GRTG+GKSTL+ L R++ R +IPQ +F GT R N+DP E+++DE+IW+ ++ L + + KL+ + + G S G +QL+CL R +L + KIL+LDE TA +D T +I+++L+ FS+CTVI HR+ ++++ L++ ++++D+ Sbjct: 1214 WPSGGQMMVNNLTAKYTSDGRAVLQDLSFSVNAGQRVGLLGRTGAGKSTLLSALLRLLSTEGEIQIDGISWNSVSLQKW-RKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPTAHLDPVTFQIIRKTLKHTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDA 1436
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MOUSE (Cystic fibrosis transmembrane conductance regulator OS=Mus musculus GN=Cftr PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32 Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL V+Y VL IS + ++ G++GRTGSGKSTL+ R++ R +I Q +F GT R N+DP ++ DE+IW+ D+ L + + G+L+ + + G S G +QL+CL R +L + KI++LDE +A +D T +I++ L+Q F+ CTVI HRI +++D L++ + +YDS Sbjct: 1200 WPSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADEVGLKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSAHLDPITYQVIRRVLKQAFAGCTVILCEHRIEAMLDCQRFLVIEESNVWQYDS 1422
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_XENLA (Cystic fibrosis transmembrane conductance regulator OS=Xenopus laevis GN=cftr PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30 Identity = 71/224 (31.70%), Postives = 123/224 (54.91%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ +++L Y VL IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F G++R N+DP +++DE++ + ++ L + + G+LD + + G S G +QLVCL R +L + KIL+LDE +A +D T +I+++L+ F+DCTVI HR+ ++++ L++ + +YDS Sbjct: 1207 WPSGGQMTVKNLSANYIDGGNTVLENISFSLSPGQRVGLLGRTGSGKSTLLSAFLRLLSTQGDIQIDGVSWQTIPLQKW-RKAFGVIPQKVFIFSGSIRKNLDPYGKWSDEELLKVTEEVGLKLIIDQFPGQLDFVLLDGGCVLSHGHKQLVCLARSVLSKAKILLLDEPSAHLDPITFQIIRKTLKHAFADCTVILSEHRLEAMLECQRFLVIEDNTVRQYDS 1429
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLB_BUCAP (Multidrug resistance-like ATP-binding protein mdlB OS=Buchnera aphidicola subsp. Schizaphis graminum GN=mdlB PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29 Identity = 71/217 (32.72%), Postives = 118/217 (54.38%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 GKI++++L +Y +L I+ P + VG+TGSGKSTL L R + ++ QDP++ T SN+ ++ ++E+IW L L V+ + S + E G N S+GQ+QL+ + R+L++ KIL+LDEATA++D+ T+ LIQ +L + T++ IAHR+++VI++DM+++L G I E Sbjct: 339 GKINIKNLSFKYKESGENILNNINIYIPSKSFVAFVGQTGSGKSTLANLLMGYYPIKHGKIYLDDKSINCISHDVLRKNILMVQQDPIVLADTFSSNITLGKKISEEKIWNVLKTVHLSSLVQSMPKGIYSILGEEGNNLSLGQKQLLAIARILVRNPKILILDEATANIDSGTEKLIQTTLSSIRAKTTLVVIAHRLSTVIEADMIVVLKKGKIVE 555
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB9B_ARATH (ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28 Identity = 70/220 (31.82%), Postives = 122/220 (55.45%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G I+L+D+ RY P P V G S P K +VG++GSGKST+I + R +P + R+++ ++ Q+PV+F T++ N+ E+ TD++I A++ + K LD+ V E+G S GQ+Q + + R +LK KIL+LDEAT+++D ++ ++Q +L S+ T + +AHR+T++ +D++ ++ G I E Sbjct: 353 GDIELKDVYFRY-PARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLTTIRTADVIAVVHQGKIVE 571 HSP 2 Score: 114.005 bits (284), Expect = 7.803e-25 Identity = 66/222 (29.73%), Postives = 117/222 (52.70%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I+ R + RY P P V R + T P K +VG +GSGKST+I + R P + R ++ ++ Q+P++F T+RSN+ T+E+I A + + D+ V E G S GQ+Q + + R +LK KIL+LDEAT+++D ++ ++Q +L + + T + +AHR+T++ ++D++ ++ +G+I E Sbjct: 1032 NGDIEFRHVSFRY-PMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSGKILIDQVEIQTFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAANAHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAE 1252
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLB_ECOLI (Multidrug resistance-like ATP-binding protein mdlB OS=Escherichia coli (strain K12) GN=mdlB PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.286e-27 Identity = 66/195 (33.85%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 VL+ I+ + P +VG TGSGKSTL L R ++++ QDPV+ T +NV + ++E++W+AL+ QL + R + + + E G N S+GQ+QL+ L RVL++ +IL+LDEATAS+D+ T+ IQ +L T++ IAHR+++++D+D +L+L G Sbjct: 356 VLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRG 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLB_ECOL6 (Multidrug resistance-like ATP-binding protein mdlB OS=Escherichia coli O6 GN=mdlB PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.286e-27 Identity = 66/195 (33.85%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 VL+ I+ + P +VG TGSGKSTL L R ++++ QDPV+ T +NV + ++E++W+AL+ QL + R + + + E G N S+GQ+QL+ L RVL++ +IL+LDEATAS+D+ T+ IQ +L T++ IAHR+++++D+D +L+L G Sbjct: 356 VLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRG 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLB_ECO57 (Multidrug resistance-like ATP-binding protein mdlB OS=Escherichia coli O157:H7 GN=mdlB PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.286e-27 Identity = 66/195 (33.85%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 VL+ I+ + P +VG TGSGKSTL L R ++++ QDPV+ T +NV + ++E++W+AL+ QL + R + + + E G N S+GQ+QL+ L RVL++ +IL+LDEATAS+D+ T+ IQ +L T++ IAHR+++++D+D +L+L G Sbjct: 356 VLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRG 550
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLB_BUCAI (Multidrug resistance-like ATP-binding protein mdlB OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mdlB PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27 Identity = 67/218 (30.73%), Postives = 115/218 (52.75%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 GKI+++++ + +L I+ + VG TGSGKSTL + R + ++ QDP++ T N+ + +E++W LD L D V+ + S + E G N S+GQ+QL+ + RVL+ K+L+LDEATA++D+ T+ LIQ++L +CT+I IAHR++++I++D +++L G I E+ Sbjct: 339 GKINIQNVSFYHKNCNKNILENINIKISSKSFVAFVGHTGSGKSTLANLIMGYYPLKNGKIYLDDKSIDSISHSVLRRNVLMVQQDPIVLSDTFFYNITLGRKIPEEKVWNILDTVHLSDLVKSMPKGIYSLLGEEGNNLSVGQKQLLAIARVLVAYPKVLILDEATANIDSGTEQLIQKTLLSIRKNCTLIIIAHRLSTIIEADSIIVLKKGKIVEF 556 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |