FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 66/219 (30.14%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+++ R +   Y       L+ I+   P  K   +VGR+GSGKST+   + R  +  +                  R +++++ Q+  +F  T+ +N+     E Y+ E+I  A       D + K E  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   D T + IAHR++++  +D +L++  G I E
Sbjct:  340 GELEFRQVNFAYPARENLALKNINLHIPVGKTVALVGRSGSGKSTIASLITRFYDIQSGEILLDGHDLREYRLSSLRNQVALVSQNVHLFNDTIANNIAYARNENYSREEIERAAKMAYAMDFINKMEHGLDTVIGENGVMLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKDRTALVIAHRLSTIEKADEILVVEDGRIIE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ R++   Y       LR I+   P  K   +VGR+GSGKST+   + R  +                     R +++++ Q+  +F  TV +N+     E+Y+ EQI EA       D + K +  LD+ + ENG   S GQRQ + + R LL+   IL+LDEAT+++DT ++  IQ +L +   + T + IAHR++++  +D ++++  G+I E
Sbjct:  340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 61/223 (27.35%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            G +    +Q  Y   P++P VL+G+S      +   +VG +G GKST++Q L R  +P A                  R  L I+ Q+P++F+ ++  N+   D     + E+I  A  +  +   +     K +++V + G   S GQ+Q + + R L+++  IL+LDEAT+++DT ++ ++Q++L +     T I IAHR++++ ++D+++++ +G ++E+
Sbjct: 1031 GNVKFNGVQFNYPTRPNIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRAVSHEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEH 1252          

HSP 2 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 60/219 (27.40%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ +++   Y       +L+G++      +   +VG +G GKST +Q + R+ +P                    R  + ++ Q+PV+F  T+  N+    E+ T ++I +A+ +    D + K   + D+ V E G   S GQ+Q + + R L++  KIL+LDEAT+++DT ++ ++Q +L +     T I IAHR+++V ++D++     G+I E
Sbjct:  389 GNLEFKNVHFNYPSRSEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 607          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_SHIFL6.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIDS6.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIBS6.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ERWCT6.606e-2430.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOUT6.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOLI6.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL66.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL56.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECO576.606e-2430.59Lipid A export ATP-binding/permease protein msbA O... [more]
MDR1_MOUSE6.606e-2427.35Multidrug resistance protein 1 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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