FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 66/219 (30.14%), Postives = 113/219 (51.60%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+++ R + Y L+ I+ P K +VGR+GSGKST+ + R + + R +++++ Q+ +F T+ +N+ E Y+ E+I A D + K E LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + D T + IAHR++++ +D +L++ G I E Sbjct: 340 GELEFRQVNFAYPARENLALKNINLHIPVGKTVALVGRSGSGKSTIASLITRFYDIQSGEILLDGHDLREYRLSSLRNQVALVSQNVHLFNDTIANNIAYARNENYSREEIERAAKMAYAMDFINKMEHGLDTVIGENGVMLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKDRTALVIAHRLSTIEKADEILVVEDGRIIE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD--PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ R++ Y LR I+ P K +VGR+GSGKST+ + R + R +++++ Q+ +F TV +N+ E+Y+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ IL+LDEAT+++DT ++ IQ +L + + T + IAHR++++ +D ++++ G+I E Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 61/223 (27.35%), Postives = 122/223 (54.71%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690 G + +Q Y P++P VL+G+S + +VG +G GKST++Q L R +P A R L I+ Q+P++F+ ++ N+ D + E+I A + + + K +++V + G S GQ+Q + + R L+++ IL+LDEAT+++DT ++ ++Q++L + T I IAHR++++ ++D+++++ +G ++E+ Sbjct: 1031 GNVKFNGVQFNYPTRPNIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRAVSHEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEH 1252 HSP 2 Score: 104.76 bits (260), Expect = 4.734e-22 Identity = 60/219 (27.40%), Postives = 115/219 (52.51%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ +++ Y +L+G++ + +VG +G GKST +Q + R+ +P R + ++ Q+PV+F T+ N+ E+ T ++I +A+ + D + K + D+ V E G S GQ+Q + + R L++ KIL+LDEAT+++DT ++ ++Q +L + T I IAHR+++V ++D++ G+I E Sbjct: 389 GNLEFKNVHFNYPSRSEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 607 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |