FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18 Identity = 63/220 (28.64%), Postives = 108/220 (49.09%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV-EPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 GK+ ++ Y L GI+ K +VGR+GSGKST+ + R + + R +++++ Q +F T+ +N+ E T EQI A + + + LD++V ENG S GQRQ + + R +L+ +L+LDEAT+++DT ++ IQ+ L + T I IAHR++++ +D +L++ G I E Sbjct: 357 GKLAFDNVTFAYPGQEKSALNGINFEVKPGKTVALVGRSGSGKSTIASLITRFYGDLSTGDIRLDDTSIYDYQLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIVHAAELAYAMEFIDTLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVE 576
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: PEDD_PEDAC (Pediocin PA-1 transport/processing ATP-binding protein pedD OS=Pediococcus acidilactici GN=pedD PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18 Identity = 63/225 (28.00%), Postives = 109/225 (48.44%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX--RTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +G I++ + Y + +L +S T P +K IVG +GSGK+TL + L EP R ++ +PQ+P +F G+V N+ T + I +A ++ ++ ++++E+G N S GQ+Q + + R LL + + DE+T+++DT T++ I L D T+I +AHR+ +D V++L HG I E S Sbjct: 483 NGDIEVNHVSFNYG-YCSNILEDVSLTIPHHQKITIVGMSGSGKTTLAKLLVGFFEPQEQHGEIQINHHNISDISRTILRQYINYVPQEPFIFSGSVLENLLLGSRPGVTQQMIDQACSFAEIKTDIENLPQGYHTRLSESGFNLSGGQKQRLSIARALLSPAQCFIFDESTSNLDTITEHKIVSKL-LFMKDKTIIFVAHRLNIASQTDKVVVLDHGKIVEQGS 705
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUSU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella suis GN=ndvA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18 Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PG+ IVG TG+GK+TLI L R+ +PAA R ++ + QD +F +V N+ T E++ A D + K D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++Q++ + + T IAHR+++V +D+VL + G + E S Sbjct: 360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKVKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18 Identity = 57/203 (28.08%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +L ++ +VG +GSGK+T+ L R E + R ++S++ Q+ +F T+ +N+ + + EQI A + +++ D++V ENG S GQRQ + + R +LK IL+LDEAT+++D+ +++ IQ +L Q T + IAHR++++ + +++L HG I E S Sbjct: 357 ILHDVNFVIEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQMSLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGS 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18 Identity = 57/203 (28.08%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +L ++ +VG +GSGK+T+ L R E + R ++S++ Q+ +F T+ +N+ + + EQI A + +++ D++V ENG S GQRQ + + R +LK IL+LDEAT+++D+ +++ IQ +L Q T + IAHR++++ + +++L HG I E S Sbjct: 357 ILHDVNFVIEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQISLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGS 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA1_COLP3 (Lipid A export ATP-binding/permease protein msbA 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18 Identity = 61/191 (31.94%), Postives = 97/191 (50.79%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 PGE +VGR+GSGKST L R + R + S + Q V+F T+ +N+ E T+ +I EA + + E L++ + ENG S GQRQ V + R LL L+LDEAT+++DT ++ IQ +L+ + T I IAHR++++ ++D ++++ G I E Sbjct: 390 PGET-LALVGRSGSGKSTASSLLLRFYDATRGEILIDDTNIEQFQLKDLRKQFSYVSQQVVLFNDTLANNIAYGKPEATEAEIIEAAKSAHVMEFAEHMEQGLETNIGENGALLSGGQRQRVAIARALLCDTPFLILDEATSALDTESERHIQDALQTLQQNRTSIVIAHRLSTIENADKIIVMEQGKIVE 579
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAGB_DICDI (Serine protease/ABC transporter B family protein tagB OS=Dictyostelium discoideum GN=tagB PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 66/224 (29.46%), Postives = 112/224 (50.00%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKST---LIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 G+I+ +++ RY P P V L I+ F K G+VG +GSGKST LI + + R+ ++ + Q P +F+ T+ N+ ++ T E I EA + + K D+++ E G N S GQ++ + + R + +RKI++LDE TA +D ++ I QS++ TV+ +AH++ +V D D + +L G L+EE Sbjct: 1516 GEIEFKNVSFRY-PTRPDVQVLHNINMKFEAGKCYGLVGPSGSGKSTTLELISKFYPLHGETGGKIYMDGIDIAKIRPNNLRSFVTNVHQHPFLFDATIGENIGYAIDNPTQEDIIEAAKLAYAHEFINDLPKKYDTQIGEAG-NLSGGQKKRIAVARAICAKRKIMLLDEITAELDPESEEAITQSIKVLTQGHTVVMVAHKVAAVRDCDKIFVLEKGYLVEE 1737
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHILO (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium loti GN=ndvA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 57/197 (28.93%), Postives = 99/197 (50.25%), Query Frame = 1 Query: 100 GISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G+S + IVG TG+GK+TLI L R+ P+ R ++ + QD + ++ N+ + ++ +I A D + K G D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T++ +++++ + D T IAHR+T+V D+D+V+ + G + E Sbjct: 353 GVSFEVQAGQTVAIVGPTGAGKTTLINLLQRVFSPSTGRILIDGIDTRTVTRKSLRHSIATVFQDAGLLNRSIEDNIRVGRADASNVEIHAAAVAAAAQDFILAKSGGYDTVVGERGGQLSGGERQRIAIARAVLKDAPILVLDEATSALDVETEDRVKEAIDELRRDRTTFIIAHRLTTVRDADLVVFMDKGRVVE 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRUME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella melitensis GN=ndvA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1 Query: 118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP-LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 PG+ IVG TG+GK+TLI L R+ +PAA R ++ + QD +F +V N+ T E++ A D + K D+ V E G S G+RQ + + R +LK IL+LDEAT+++D T+ ++Q++ + + T IAHR+++V +D+VL + G + E S Sbjct: 360 PGQT-VAIVGPTGAGKTTLINLLQRVFDPAAGRIMIDGTDTRTVSRRSLRHAIATVFQDAGLFNRSVEDNIRVGRANATHEEVHAAAKAAAAHDFILAKSEGYDTFVGERGSQLSGGERQRLAIARAILKDSPILVLDEATSALDVETEEKLKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGS 552
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BARQU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella quintana GN=ndvA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 63/192 (32.81%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 130 KTG----IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEE 687 KTG IVG TG+GK+TLI L R+ EP R L+ + QD +F ++ N+ T+E+++EA D + KK + ++ V E G S G++Q + + R +LK IL+LDEAT+++D T+ ++ +L + T IAHR+++V +D+VL L +G LIE+ Sbjct: 359 KTGQTVAIVGPTGAGKTTLINLLQRVYEPTFGHISIDGINIRSINRESLRKSLATVFQDAGLFNRSIHDNILIGRATATNEELYEAAKIAAAHDFILKKTDRYNTMVGERGSQLSGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRHADLVLFLENGHLIEK 550 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |