FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 95/224 (42.41%), Postives = 142/224 (63.39%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            +WP  GKI +++L VRY   +  VL+ ++      +K GI GRTGSGKS+     FR+V+                     R+RLSII QDPV+F GT+R N+DP ++ +D  +WEAL+  QL   V+   G LD+ +TE GEN+S GQRQL CL R  +++  I ++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR+ +++ +D+V++L  G I E+D
Sbjct: 1338 NWPDQGKIQIQNLSVRYDSSLKPVLKHVNTLISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVMVLKRGAILEFD 1561          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC5_DICDI (ABC transporter C family member 5 OS=Dictyostelium discoideum GN=abcC5 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 99/235 (42.13%), Postives = 146/235 (62.13%), Query Frame = 1
Query:    7 SRPNHSWPSHGK------IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            +RP   WPS         I   ++ + Y   +P VL+GIS      +K GI GRTGSGKS+L+  LFRIVE ++                  R++L+IIPQ+PVMF GT+RSN+D L E+TD ++W+ L + QL + V+K     +       +NWS GQ+QL+ LGR LLK+ KIL+ DEATASVD+ +D LIQ+ +R+ F D  ++TIAHR+ ++++SD +++L  G I E++
Sbjct: 1192 NRPPMGWPSLTNSNHTPPIIFENVVMSYRQGLPAVLKGISFEIKAGEKIGICGRTGSGKSSLLLALFRIVELSSGRIIIDGLDISKIGLKDLRSQLAIIPQEPVMFTGTLRSNLDSLSEHTDSELWDVLKEIQLYEHVKKVSVADEGLDLRVNDNWSQGQKQLIGLGRALLKKPKILVCDEATASVDSLSDELIQRIIREKFKDAIILTIAHRLNTIVESDRIMVLDSGSIVEFN 1426          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCF_DICDI (ABC transporter C family member 15 OS=Dictyostelium discoideum GN=abcC15 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 86/224 (38.39%), Postives = 145/224 (64.73%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G+I+ +++++RY P+    LR  S     +++ GI+GR+GSGKST+  +LFR++E ++                  R+ + I+PQDP +F G++R N+DP +++TD +IWEAL K +L   V     KL+S V + G+  ++G +QL+CL R +L+  KI++ DEAT S+D  T  LI+Q++ ++F DCT++TIAH I +++DSD + ++  G + E+D+
Sbjct: 1187 WPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLV-QGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDT 1409          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR_LEITA (Multidrug resistance protein OS=Leishmania tarentolae GN=PGPA PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 96/221 (43.44%), Postives = 134/221 (60.63%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRK-ILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G + L  +Q+RY   +P VLRG+S      +K GIVGRTGSGKSTL+ T  R+VE                     R   S+IPQDPV+F+GTVR NVDP  E +  ++W AL+   L + V  +   +DS+V E G N+S+GQRQL+C+ R LLKR    +++DEATA++D A D  IQ ++   FS  TVITIAHR+ +V   D ++++ HG++ E  S
Sbjct: 1284 GSLVLEGVQMRYREGLPLVLRGVSFQIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGVIHVNGREMSAYGLRDVRRHFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKRGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGVVAEMGS 1504          

HSP 2 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 52/198 (26.26%), Postives = 91/198 (45.96%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDT-ATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            +LR +S T P  K T ++G TGSGKSTL+  L                             ++ +PQ   +   T+R N+   +E   E + + +  CQL  ++ +  G LD+++ E G N S GQ+  V L R +   R + +LD+  +++D      ++Q  +       T +   H+I  +  +D +++L HG I
Sbjct:  649 LLRNVSLTIPKGKLTMVIGSTGSGKSTLLGALM-------------GEYSVESGELWAERSIAYVPQQAWIMNATLRGNILFFDEERAEDLQDVIRCCQLEADLAQFCGGLDTEIGEMGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGQRIVQDVILGRLRGKTRVLATHQIHLLPLADYIVVLQHGSI 833          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YOR1_YEAST (Oligomycin resistance ATP-dependent permease YOR1 OS=Saccharomyces cerevisiae GN=YOR1 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 98/246 (39.84%), Postives = 143/246 (58.13%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALD-------------KCQLGDEVRKKEGK-----LDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P  SWPS G+I   ++   Y P +P VL+ ++      +K GI GRTG+GKST++  L+R+ E  A                  R +L+IIPQDPV+F GT+R N+DP  E TD+++W+AL              K Q  DE     GK     LD  V E G N+S+G+RQL+ L R L+++ KIL+LDEAT+SVD  TD  IQ  + + F DCT++ IAHR+ ++++ D +L+L  G + E+D+
Sbjct: 1203 PPESWPSMGEIIFENVDFAYRPGLPIVLKNLNLNIKSGEKIGICGRTGAGKSTIMSALYRLNELTAGKILIDNVDISQLGLFDLRRKLAIIPQDPVLFRGTIRKNLDPFNERTDDELWDALVRGGAIAKDDLPEVKLQKPDE-NGTHGKMHKFHLDQAVEEEGSNFSLGERQLLALTRALVRQSKILILDEATSSVDYETDGKIQTRIVEEFGDCTILCIAHRLKTIVNYDRILVLEKGEVAEFDT 1447          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP6_MOUSE (Multidrug resistance-associated protein 6 OS=Mus musculus GN=Abcc6 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 93/221 (42.08%), Postives = 138/221 (62.44%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            WP  G+I+ RD  +R+ P +P  ++G+S      +K GIVGRTG+GKS+L   L R+ E A                   R+R++IIPQDPV+F G++R N+D L+E+TDE IW AL+  QL   V    G+L  +    G++ S+G +QL+CL R LL++ +IL+LDEATASVD  T+  +Q +L + F+ CT++ IAHR+ SV+D   VL++  G + E
Sbjct: 1254 WPCGGQIEFRDFGLRHRPELPLAVQGVSLKIHAGEKVGIVGRTGAGKSSLAWGLLRLQEAAEGNIWIDGVPITHVGLHTLRSRITIIPQDPVLFPGSLRMNLDLLQEHTDEGIWAALETVQLKAFVTSLPGQLQYECAGQGDDLSVGHKQLLCLARALLRKTQILILDEATASVDPGTEMQMQAALERWFTQCTLLLIAHRLRSVMDCARVLVMDEGQVAE 1474          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP6_RAT (Multidrug resistance-associated protein 6 OS=Rattus norvegicus GN=Abcc6 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 94/224 (41.96%), Postives = 139/224 (62.05%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WP  G+I+ RD  +R+ P +P  ++G+S      +K GIVGRTG+GKS+L   L R+ E                     R+R++IIPQDPV+F G++R N+D L+E TDE IW AL+  QL   V    G+L  + +  G++ S+GQ+QL+CL R LL++ +IL+LDEATASVD  T+  +Q +L + F+ CTV+ IAHR+ SV++   VL++  G + E  S
Sbjct: 1258 WPCGGQIEFRDFGLRHRPELPMAVQGVSLKIHAGEKVGIVGRTGAGKSSLTWGLLRLQEATEGGIWIDGVPITDMGLHTLRSRITIIPQDPVLFPGSLRMNLDLLQENTDEGIWAALETVQLKAFVTSLPGQLQYECSGQGDDLSVGQKQLLCLARALLRKTQILILDEATASVDPGTEIQMQAALERWFAQCTVLLIAHRLRSVMNCARVLVMDEGQVAESGS 1481          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC1_DICDI (ABC transporter C family member 1 OS=Dictyostelium discoideum GN=abcC1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 84/224 (37.50%), Postives = 137/224 (61.16%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            W + G+I+ R+++++Y       L+  +     +   GIVGRTG+GKST+   LFR+VE +                   R+ L I+PQDP +F GT+R N+DP  +YTD +IW AL+K +L   +     KL++ + E G+  S GQ+QL+CL R +LK  K++++DEAT+ +D  T +LI+Q++   F +CT++TIAHR+ ++IDS  + ++  G + EYD+
Sbjct: 1110 WLTKGEIEFRNVEIKYGHSGESSLKNFTLKINQKDHIGIVGRTGAGKSTIGNGLFRMVECSKGSILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNSKVVLMDEATSGIDYVTSDLIKQTINNCFKNCTMLTIAHRLDTIIDSTKIAVIDKGKLIEYDT 1333          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 90/221 (40.72%), Postives = 135/221 (61.09%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            WP HG ++  ++ +RY   +P  L  IS T  G    G++GRTG+GKS+++  LFR+    +                  R+ L+++PQ P +F+G++R N+DPL    D +IWE LDKC++   V +  G LDS V E+G ++S+GQRQL+CL R LLK  KIL LDE TA++D  T +L+  ++       TVITIAHRI++V+D D +L+L  G++ E
Sbjct:  952 WPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAV-ESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVE 1171          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 93/246 (37.80%), Postives = 140/246 (56.91%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDE-------------------VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            P  +WP  G ++L++L +RY+PH    L  +S       K GIVGRTG+GKS++I  ++R+ +                     R  +S IPQDP +F+GTVRSN+DP + Y+D QI+  L K  L +E                   +R +   L++ V   G N S GQRQL+CL R +L  R I+++DEATAS+D  +D  IQ+++R+   + T++TIAHR+ SVID D +L++  G ++EYD
Sbjct: 1275 PPANWPQTGDVELKNLSLRYSPHSSKALDNVSFKVKAGTKVGIVGRTGAGKSSIIAAIYRLSDWENGTITIDNKDIKHIPLERLRNSISCIPQDPTLFDGTVRSNLDPFDRYSDVQIYGVLSKVGLIEECDELCLIFEQEQPNFSSHKLRNRFIDLNTVVKSGGSNLSQGQRQLLCLARSMLGARNIMLIDEATASIDYISDAKIQKTIRETMKNTTILTIAHRLRSVIDYDKILVMEMGRVKEYD 1520          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ABCC8_CRICR2.493e-4742.41ATP-binding cassette transporter sub-family C memb... [more]
ABCC5_DICDI4.252e-4742.13ABC transporter C family member 5 OS=Dictyostelium... [more]
ABCCF_DICDI7.253e-4738.39ABC transporter C family member 15 OS=Dictyosteliu... [more]
MDR_LEITA8.019e-4643.44Multidrug resistance protein OS=Leishmania tarento... [more]
YOR1_YEAST1.047e-4539.84Oligomycin resistance ATP-dependent permease YOR1 ... [more]
MRP6_MOUSE1.368e-4542.08Multidrug resistance-associated protein 6 OS=Mus m... [more]
MRP6_RAT3.980e-4541.96Multidrug resistance-associated protein 6 OS=Rattu... [more]
ABCC1_DICDI2.580e-4437.50ABC transporter C family member 1 OS=Dictyostelium... [more]
AB13C_ARATH9.803e-4440.72ABC transporter C family member 13 OS=Arabidopsis ... [more]
NFT1_YEAST3.725e-4337.80ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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