FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_OTOGA (Cystic fibrosis transmembrane conductance regulator OS=Otolemur garnettii GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  RY      +L  IS +    ++ G++GRTG+GKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1206 WPSGGQMTVKDLTARYIDSGNAILENISFSISPGQRVGLLGRTGAGKSTLLSAFLRLLNTEGDIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_HUMAN (Cystic fibrosis transmembrane conductance regulator OS=Homo sapiens GN=CFTR PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_GORGO (Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_LOXAF (Cystic fibrosis transmembrane conductance regulator OS=Loxodonta africana GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 76/229 (33.19%), Postives = 128/229 (55.90%), Query Frame = 1 
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + +++WPS G + ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+ +D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HR+ ++++    L++    + +YDS
Sbjct: 1201 KKDYNWPSGGHMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQCSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRVEAMLECQQFLVIEENTVRQYDS 1428
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_COLGU (Cystic fibrosis transmembrane conductance regulator OS=Colobus guereza GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTIKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTKGEIQIDGVSWDSVTLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_AOTNA (Cystic fibrosis transmembrane conductance regulator OS=Aotus nancymaae GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PAPAN (Cystic fibrosis transmembrane conductance regulator OS=Papio anubis GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MACNE (Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MACMU (Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
[Close]
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MACFU (Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
CFTR_OTOGA2.586e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HUMAN2.586e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_GORGO2.586e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_LOXAF3.377e-3633.19Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_COLGU3.377e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_AOTNA3.377e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PAPAN4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACNE4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACMU4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFU4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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