FC931311

Overview
NameFC931311
Unique NameFC931311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4548 contig Ccv1_Contig4548:40..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.291e-36
Identity = 81/198 (40.91%), Postives = 115/198 (58.08%), Query Frame = 1
Query:   49 SYLFVTLILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSAR-GFEVIDAIKTRLEA--ACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFA 633
            S + V  +   IS+   T+TAQL   FY  SCPN ++I +  + + + +      + LRLFFHDCFVNGCD SV++  T T   EK+   N + A  GF+V+   K  L+A  +C   VSCADILA+A RD V    GP++ V LGR D   ++ ++ N  +PGP++ +  L  +FA   LT +DM  LS  H +GFA
Sbjct:    5 SLVVVVTLSLAISMFPDTTTAQLKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATLRLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAGDGFDVVIKAKKALDAIPSCKNKVSCADILALATRDVVVAAKGPSYAVELGRFDGLVSTAASVNGNLPGPNNKVTELNKLFAKNKLTQEDMIALSAAHTLGFA 202          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.291e-36
Identity = 82/187 (43.85%), Postives = 110/187 (58.82%), Query Frame = 1
Query:   67 LILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIG 627
            L++ + SLL  TS+A LS  FYA+SC   + + R+ +  A +  P     +LRLFFHDCFV GCD SVL+   +T    + + P   S  GF VID  K  +E  C ATVSCADI+A+AARD V   GGP   +P GRRD + +  +     I     +L  +I  F++KGL+ QD+ VLSG H IG
Sbjct:   15 LLMFLSSLL--TSSANLSFNFYASSCSVAEFLVRNTVRSATSSDPTIPGKLLRLFFHDCFVQGCDASVLIQGNST----EKSDPGNASLGGFSVIDTAKNAIENLCPATVSCADIVALAARDAVEAAGGPVVEIPTGRRDGKESMAANVRPNIIDTDFTLDQMIDAFSSKGLSIQDLVVLSGAHTIG 195          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 78/193 (40.41%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   61 VTLILTIISLLACTSTAQ-LSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFAR 636
            V+++L + +++     A+ LS T+Y  SCP  ++I ++ +  A+   P  AA ++R+ FHDCF+ GCD S+LLD T   T EK++ P   S RG+E+ID  K ++E  C   VSCADI+A+AARD V   GGP + +P GR D +  S+      +P P  + + LI  F  +G T QD+  LSG H +G AR
Sbjct:    7 VSMVLLMHAIVGFPFHARGLSMTYYMMSCPFAEQIVKNSVNNALQADPTLAAGLIRMLFHDCFIEGCDASILLDSTKDNTAEKDS-PANLSLRGYEIIDDAKEKIENRCPGVVSCADIVAMAARDAVFWAGGPYYDIPKGRFDGK-RSKIEDTRNLPSPFLNASQLIQTFGQRGFTPQDVVALSGAHTLGVAR 197          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.847e-35
Identity = 77/201 (38.31%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   34 MASSISYLFVTLILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRN-SARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFA 633
            M+S I+ LFV L+   +  +       L+  +Y  +CP+F +I R+ +T    +QP  AA  LRLFFHDCF+ GCD SVL+   +    E++   N +     F+++  IKT LE +C   VSCADILA A RD V ++GGP + V LGR+D   +        +P  + S+  ++S+F   G T +++  LSGGH IGF+
Sbjct:    1 MSSVINVLFVVLVF--VPSIYSAPPPNLTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLIATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLKELVALSGGHTIGFS 199          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER35_ARATH (Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 80/188 (42.55%), Postives = 113/188 (60.11%), Query Frame = 1
Query:   79 IISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSAR-GFEVIDAIKTRLEA--ACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFA 633
            IIS+   T+TAQLS  FY+ +CPN ++I R+ + K + +      + LRLFFHDCFVNGCD SV++  T     EK+   N + A  GF+V+   K  L++  +C   VSCADIL +A RD V   GGP++ V LGR D   ++ S+    +PGPS ++  L ++F    LT +DM  LS  H +GFA
Sbjct:   15 IISVFPDTTTAQLSRGFYSKTCPNVEQIVRNAVQKKIKKTFVAVPATLRLFFHDCFVNGCDASVMIQSTPKNKAEKDHPDNISLAGDGFDVVIQAKKALDSNPSCRNKVSCADILTLATRDVVVAAGGPSYEVELGRFDGLVSTASSVEGNLPGPSDNVDKLNALFTKNKLTQEDMIALSAAHTLGFA 202          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER25_ARATH (Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 83/192 (43.23%), Postives = 108/192 (56.25%), Query Frame = 1
Query:   52 YLFVTLILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIG 627
            Y ++ +I+ ++ L     +  L   +Y+TSCP  + I R  +    +  P  +  +LRL FHDCFV GCDGSVL+   +    E+ A PN    RG EVID  K RLEA C   VSCADILA+AARD V L  GP+W VP GR+D R +  + A S +P P  S+A     F  KGL   D+  L G H IG
Sbjct:    8 YCYIMIIMLVLVLGKEVRSQLLKNGYYSTSCPKAESIVRSTVESHFDSDPTISPGLLRLHFHDCFVQGCDGSVLIKGKSA---EQAALPNLG-LRGLEVIDDAKARLEAVCPGVVSCADILALAARDSVDLSDGPSWRVPTGRKDGRISLATEA-SNLPSPLDSVAVQKQKFQDKGLDTHDLVTLLGAHTIG 194          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER55_ARATH (Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 1
Query:   16 PFLDWFMASSISYLFVTLILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSAR-GFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIG 627
            P + WF+            + + S++A  S AQLS  +YA++CP+ + I +  +T    +    A + LR+FFHDCFV GCD SV +  +     EK+A  N++ A  GF+ +   KT +E+ C   VSCADILA+AARD V L+GGP + V LGRRD   +  S    ++P P   +  L+ +FA+ GL+  DM  LSG H IG
Sbjct:   11 PMMMWFLG-----------MLLFSMVA-ESNAQLSENYYASTCPSVELIVKQAVTTKFKQTVTTAPATLRMFFHDCFVEGCDASVFIA-SENEDAEKDADDNKSLAGDGFDTVIKAKTAVESQCPGVVSCADILALAARDVVVLVGGPEFKVELGRRDGLVSKASRVTGKLPEPGLDVRGLVQIFASNGLSLTDMIALSGAHTIG 202          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 81/192 (42.19%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   67 LILTIISLLACTSTAQLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRNSAR-GFEVIDAIKTRLEAA--CNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFA 633
            L+L  + L    S+AQL   FYA SCPN ++I R+ + K V +      + LRL+FHDCFVNGCD SV++  T     EK+   N + A  GF+ +   K  L+A   C   VSCADIL +A RD V L GGP + V LGR D  +++ ++   ++P P+  +  L S+FA  GL+  DM  LSG H +GFA
Sbjct:   11 LLLLSLCLTLDLSSAQLRRNFYAGSCPNVEQIVRNAVQKKVQQTFTTIPATLRLYFHDCFVNGCDASVMIASTNNNKAEKDHEENLSLAGDGFDTVIKAKEALDAVPNCRNKVSCADILTMATRDVVNLAGGPQYDVELGRLDGLSSTAASVGGKLPHPTDDVNKLTSLFAKNGLSLNDMIALSGAHTLGFA 202          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 79/175 (45.14%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  115 LSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRN-SARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDART-ASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFA 633
            LS  FY  +CP  + I R E+ K   R    AA+ILR+ FHDCFV GC+ SVLL  +A+  GE+++ PN     + F VI+ ++  ++  C   VSC+DILA+AARD V L GGP + VPLGRRD+   ASQ    + +P P  + + LI+ FA + L   D+  LSGGH IG A
Sbjct:   44 LSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQQAFVVINNLRALVQKKCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIA 218          
BLAST of FC931311 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 87/207 (42.03%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   34 MASSISYLFVTLILTIISLLACTSTAQLSPT-------FYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEKNAGPNRN-SARGFEVIDAIKTRLEAACNAT-VSCADILAVAARDGVALLGGPTWTVPLGRRD-ARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAI 624
            +A++ +   V LI +  +  A    A+  P        FY  SCP  + I R  +  AV R    AA +LRL FHDCFV GCD SVLLD +AT  GE+ A PN       F+ I+ I  RL   C  T VSC+D+LA+AARD V + GGP++ VPLGRRD A  A+Q    S +P P++++  L+++ +   L A D+  LSGGH I
Sbjct:    7 LAAAAAVAAVVLICSSSTATAADGNARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
The following BLAST results are available for this feature:
BLAST of FC931311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER73_ARATH8.291e-3640.91Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER46_ARATH8.291e-3643.85Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER47_ARATH1.083e-3540.41Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER41_ARATH1.847e-3538.31Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER35_ARATH2.412e-3542.55Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=... [more]
PER25_ARATH2.412e-3543.23Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=... [more]
PER55_ARATH5.374e-3539.51Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=... [more]
PER50_ARATH7.019e-3542.19Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER12_ARATH2.042e-3445.14Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER1_SORBI2.667e-3442.03Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103G06EF PostHarvP1 Citrus clementina cDNA clone C34103G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931311 ID=FC931311; Name=FC931311; organism=Citrus clementina; type=EST; length=638bp
ATCTGCTTTAACTTTCCATTTTTGGATTGGTTCATGGCATCTTCAATTTC
TTATTTGTTTGTTACACTTATACTCACAATTATATCCCTTCTAGCTTGCA
CCTCCACTGCGCAACTTTCTCCAACCTTTTATGCAACATCTTGCCCCAAT
TTTCAAAGAATCGCGAGGGATGAAATGACCAAAGCTGTTAATAGACAACC
GCGTAATGCTGCCTCTATTCTTCGCCTCTTCTTCCATGACTGCTTCGTTA
ATGGCTGCGATGGGTCGGTACTACTAGATGACACAGCCACATTCACCGGC
GAGAAGAATGCAGGACCAAACAGAAACTCTGCTAGGGGTTTCGAAGTGAT
TGACGCCATTAAAACTCGTCTGGAAGCAGCTTGCAACGCCACCGTTTCAT
GTGCCGACATCCTTGCTGTTGCAGCCCGAGACGGTGTCGCCTTGCTTGGA
GGACCGACTTGGACGGTACCGCTCGGCCGGCGAGATGCAAGAACGGCCAG
TCAGAGTGCAGCCAATAGCCAAATCCCTGGACCATCCTCCAGCCTGGCAA
CACTCATATCAATGTTTGCAGCCAAAGGCCTGACCGCCCAAGACATGACA
GTCCTCTCCGGCGGCCACGCCATCGGATTCGCTCGATG
back to top