FC931314

Overview
NameFC931314
Unique NameFC931314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15308 contig Ccv1_Contig15308:1..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931314 vs. ExPASy Swiss-Prot
Match: NCASE_PSEAE (Neutral ceramidase OS=Pseudomonas aeruginosa GN=PA0845 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 64/181 (35.36%), Postives = 96/181 (53.04%), Query Frame = 2 
Query:  116 GRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTG 655
            G GP + +EF++TR IG RQF KA ++  +A E++ G++D R  ++DF++L +     +G    + T                         ++  NPF   +  LL   P +E + CQ  K IL DTG  K+PY W P++LPIQ+ ++GQL +L  P EFT MAG R+R AV+      G
Sbjct:  282 GSGP-FDNEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIGTSLAAGSTEDGPGPLGL----EEGNNPFLSALGGLLTGVPPQELVQCQAEKTILADTGN-KKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAG 456
The following BLAST results are available for this feature:
BLAST of FC931314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NCASE_PSEAE2.143e-2235.36Neutral ceramidase OS=Pseudomonas aeruginosa GN=PA... [more]

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Properties
Property NameValue
Genbank descriptionC34103G09EF PostHarvP1 Citrus clementina cDNA clone C34103G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931314 ID=FC931314; Name=FC931314; organism=Citrus clementina; type=EST; length=702bp
TAAGTCCAACTGCGGCGTTCTTAGCCCAAATGTGCTTGGAGCATTCTGTA
TAGATTCTGGGCTACCTTGTGACTTCACTCATAGTACCTGTGGTGGGAAG
AATGAGATGTGCTATGGCCGAGGACCTGGTTACCCAGACGAATTTGAAAG
TACACGTATTATTGGAGAGAGGCAATTTAGAAAAGCTGTAGATCTTTTCA
ATAAAGCATCCGAAAAATTAGAAGGAAAGATTGACTATCGTCACAGTTAT
CTGGACTTCTCCCAGCTTGAGGTGGCAATTCCTAAACAAAATGGAGGATC
AGAGACAGTAAAAACATGTCCTGCTGCTATGGGGTTTGCATTTGCTGCAG
GAACAACTGATGGACCAGGAGCATTTGATTTTACCCAAGGAGATGACAAG
GGCAATCCTTTTTGGAGGCTGGTACGCGACTTACTTAAAAAACCAGATAA
GGAACAAATTAATTGTCAGTACCCAAAGCCCATCTTACTCGATACTGGTG
AAATGAAGCAACCATACGACTGGGCACCTTCAATACTTCCAATTCAGATC
CTCCAAGTAGGGCAGCTAGTCATTCTTAGTGTACCTGGAGAGTTTACGAC
AATGGCTGGGAGGCGACTTCGTGATGCTGTGAAGACGGTGGTCACTACTA
CTGGTGAATCCNATAGCATGTTCATGTTGTTTTAGCTGGCTTGACTAATC
CT
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