FC931315

Overview
NameFC931315
Unique NameFC931315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931315_ssr85 microsatellite FC931315_ssr85:85..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931315 vs. ExPASy Swiss-Prot
Match: MPCP_YEAST (Mitochondrial phosphate carrier protein OS=Saccharomyces cerevisiae GN=MIR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  420 IEMYSPAFYAACTAGGTLSCGLTHTAVTPLDLVKCNMQIDPAKY-KSITSGFGVLLKEQGLKGFFRGWVPTLFGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYL 749
            I  YS + Y      G + CG TH+++ P+D+VK  +Q++P  Y K +   F  ++  +G      G+ PTL GYS QGA              D  G + A++YK  +Y+
Sbjct:    9 IPQYSVSDYMKFALAGAIGCGSTHSSMVPIDVVKTRIQLEPTVYNKGMVGSFKQIIAGEGAGALLTGFGPTLLGYSIQGAFKFGGYEVFKKFFIDNLGYDTASRYKNSVYM 119          
The following BLAST results are available for this feature:
BLAST of FC931315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MPCP_YEAST5.588e-1131.53Mitochondrial phosphate carrier protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC34103G10EF PostHarvP1 Citrus clementina cDNA clone C34103G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931315 ID=FC931315; Name=FC931315; organism=Citrus clementina; type=EST; length=752bp
GGAACATCCTCGTTTTCATTTAAAGCTGATTTCTCGCGCTCCATTTATGG
CTCCAACCACAAACGTTCCCCTTTCATTCGTTCCCTCTCTCTCTCTCTAT
TCAGAAACAGTCTCATTTTTCATTTTTTCTTTTTCTTTCTCGTGAGAGGC
CAATACAACACAAATAAAGCTAAAATAAACGAACCTTTGATTTCGATATA
ATTACGAAAATGGGACAGTCGGACGATCAGCACTACTCTCGCCAGTCACT
GATGCCGAGCTTTCTCTACTCGTCGTCGTCCAAACGGCTCTTCTATTTGG
ACGCCCTGATGAATAATACTAAAGCTGGATTGTTGAATCGATCAGCGCAG
TCCGTTTCGCCGTCATCCAGTGGTGCGTCGAAAAAAGCCAGCTTTGTGAT
TCCGGCGCCGAAAGAGAAGATTGAGATGTACTCGCCTGCTTTTTACGCCG
CGTGTACAGCCGGCGGGACGTTGAGCTGCGGCCTCACTCACACGGCCGTG
ACTCCTCTCGATCTCGTTAAATGCAATATGCAGATTGACCCAGCAAAGTA
CAAGAGCATTACGTCTGGATTTGGAGTGTTGCTCAAGGAGCAGGGACTGA
AGGGCTTCTTCAGAGGTTGGGTACCAACCCTGTTTGGTTACAGCGCTCAA
GGTGCCTGCAAGTTTGGATTCTATGAGTTCTTTAAGAAGTATTACTCGGA
CATTGCTGGGCCTGAGTATGCTGCCAAGTACAAGACATTGATATACCTTG
CC
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