FC931320

Overview
NameFC931320
Unique NameFC931320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:528..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: CGL_HUMAN (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.839e-40
Identity = 88/231 (38.10%), Postives = 146/231 (63.20%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI-DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 691
            + G+  + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+ + D TF +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S   E L  ++R L + LG   +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++
Sbjct:  127 EFGLKISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTH 356          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 89/231 (38.53%), Postives = 145/231 (62.77%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 691
            + G+  + +D +  + LEAA+      L + E+PTNP L+  D+K  + + HK K  I+ +D TF +   Q+ L+LGAD+ + SATK++ GH+DV+ G +S  S+ L  ++R L + LG   +P   YL  RG+KTL +R+++     + +A+ LE++P+V++V YPGL SHP+H +A +Q TG  G+VSF + G L     F+  +K+  +A S GG ES+ + PAIM++
Sbjct:  126 EFGLKISFVDCSKTKLLEAAITPQT-KLVWIETPTNPTLKLADIKACAQIVHKHKDIILVVDNTFMSAYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVTSDDLNERLRFLQNSLGAVPSPFDCYLCCRGLKTLQIRMEKHFRNGMAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCTGCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTH 355          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: CGL_MOUSE (Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.137e-40
Identity = 88/231 (38.10%), Postives = 145/231 (62.77%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI-DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 691
            + G+  + +D +  + LEAA+      L + E+PTNP L+  D+   + + HK+G I+ + D TF +   Q+ L+LGAD+ + SATK++ GH+DV+ G +S  S+ L +++R L + LG   +P   YL  RG+KTL +R+++     + +A+ LE +P+V++V YPGL SHP+H +A +Q +G  G+VSF + G L     F+  LK+  +A S GG ES+ + PAIM++
Sbjct:  126 EFGLKISFVDCSKTKLLEAAITPQT-KLVWIETPTNPTLKLADIGACAQIVHKRGDIILVVDNTFMSAYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNSDDLNSRLRFLQNSLGAVPSPFDCYLCCRGLKTLQVRMEKHFKNGMAVARFLETNPRVEKVVYPGLPSHPQHELAKRQCSGCPGMVSFYIKGALQHAKAFLKNLKLFTLAESLGGYESLAELPAIMTH 355          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.988e-40
Identity = 80/206 (38.83%), Postives = 129/206 (62.62%), Query Frame = 2
Query:   11 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 625
            G++   ID AD E + AA+  N   L + E+PTNP L+   +  ++ +  + G    +D TFA+P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G I + +++L  +++ L +  G    P   +L++RG+KTL +R++     AL +A+ L  HP V++V YPGL SHP+H++A +QM GFGG++S  + G   A    +   K+
Sbjct:  115 GLSFDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFASPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFDCWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGVEKVIYPGLPSHPQHNLAREQMRGFGGMISILLKGGAEAANAMVSKTKL 319          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.541e-38
Identity = 87/225 (38.67%), Postives = 133/225 (59.11%), Query Frame = 2
Query:   29 IDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEK-LVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 691
            +D  D + L AAL      L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVLHS TK++ GH+DV+AG +   +  +VT++    N   V GGA +   +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+DGD     +F+  L +  +A S GG ES++   A M++
Sbjct:  122 VDQGDEQALRAALAEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH 342          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 87/237 (36.71%), Postives = 141/237 (59.49%), Query Frame = 2
Query:   38 ADMEGLEAALNNN-----------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTGF--GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 691
            A+  G+E +  N+           N  L + E+PTNP L+  D++ V+DL  K  A    I+ +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G   +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + +  +Q      GG++SF + G   A  KF  + ++  +A S GG ES+++ PA+M++
Sbjct:  115 ANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTH 351          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: CYSA_STRCO (Putative cystathionine gamma-lyase OS=Streptomyces coelicolor GN=cysA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.508e-34
Identity = 79/201 (39.30%), Postives = 118/201 (58.71%), Query Frame = 2
Query:   74 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ 673
            +   L + E+P+NP L   DV+ + +  H  GA+V +D T ATPL Q+ L LGAD  + S TK + GH DVL G ++G +   +  +R    ++G    P  A+L  R + TL LRV +Q+STAL++A+ L   P++  + YPGL   P H +A+QQM  +G VVSF +     A  +F+DAL++   A SFGG  S  ++
Sbjct:  154 DGAKLLWIETPSNPGLDVCDVRRLVEAAHAGGALVAVDNTLATPLGQRPLELGADFSVASGTKQLTGHGDVLLGYVAGRDAGAMAAVRRWRKIVGAIPGPMEAWLAHRSIATLQLRVDRQDSTALKVAEALRTRPEITGLRYPGLPDDPSHKVASQQMLRYGCVVSFTLPSRARAD-RFLDALRLVEGATSFGGVRSTAER 353          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METB_BACSU (Cystathionine gamma-synthase OS=Bacillus subtilis GN=metB PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32
Identity = 80/233 (34.33%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-CISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 700
            K G+T    D +D + L + +  N  ++F  E+PTNP ++  D++ ++ +  + G ++ +D TF TP+ Q+ L LGAD+V+HSATK++GGHND+LAG  +   E+L  ++    + +G  L P  ++L++RGMKTL LR++Q  + A  +A  LE   ++  V YPG                 GG++SF +  +      F+ ALK    A S GG ES +  PA  ++ D+
Sbjct:  113 KYGLTFHYDDFSDEDCLRSKITPNTKAVF-VETPTNPLMQEADIEHIARITKEHGLLLIVDNTFYTPVLQRPLELGADIVIHSATKYLGGHNDLLAGLVVVKDERLGEEMFQHQNAIGAVLPPFDSWLLMRGMKTLSLRMRQHQANAQELAAFLEEQEEISDVLYPGK----------------GGMLSFRLQKEEWVN-PFLKALKTICFAESLGGVESFITYPATQTHMDI 327          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METB_HAEIN (Cystathionine gamma-synthase OS=Haemophilus influenzae GN=metB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 77/225 (34.22%), Postives = 125/225 (55.56%), Query Frame = 2
Query:   29 IDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 700
            ++ A    +EAA+N N  ++F  E+P+NP +   DV  ++ L  K   ++ +D TF TP+  + L LGAD+V+HS TK+I GHND L G I +  ++L  +I  + +  G  L+P  ++L IRGMKTL LR+++    A  +A+ L+A P+V+ V YP                  GG++SF +  +      F+ ++K+   A S GG ES +  PA  ++ D+
Sbjct:  124 VNTASASAIEAAINPNTKAIFI-ETPSNPLMEECDVVEIAKLAKKHNLMLIVDNTFLTPVLSRPLDLGADVVIHSGTKYIAGHNDALVGLIVAKGQELCDRIAYIQNGAGAVLSPFDSWLTIRGMKTLSLRMKRHQENAQAIAEFLKAQPQVESVLYPNK----------------GGMLSFRLQDEAWVN-TFLKSIKLITFAESLGGTESFITYPATQTHMDI 330          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METC_RHIL3 (Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 77/225 (34.22%), Postives = 127/225 (56.44%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF--EVDGDLTATIK---FIDALKIPYIAPSFGGCESI 664
            ++G+      P    G+E  L  +N  L  TE+P +      D+  +S + H+ GA+V +D T+ATP+  + L  G D+ +H++TK+  GH+D+L G +S + +   +++  + VLG    P+ AY I+RG++T+ LR+++   +AL +AK LE    V RV +P L S P HH+  +   G  G+ SF    DG   +  K   F+DAL+I  +  S+GG ES+
Sbjct:  126 RLGVEVEYYHPEIGAGIET-LFRSNTKLVHTEAPGSNTFEMQDIPAISAVAHRHGAVVMMDNTWATPVYFRPLDHGVDISIHASTKYPSGHSDILLGTVSANAEHWERLKEANGVLGICGAPDDAYQILRGLRTMGLRLERHYESALDIAKWLEGRDDVARVLHPALPSFPSHHLWKRDFKGASGIFSFVLAADGPEKSRAKAHAFLDALRIFGLGYSWGGFESL 349          
The following BLAST results are available for this feature:
BLAST of FC931320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CGL_HUMAN1.839e-4038.10Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
CGL_RAT2.402e-4038.53Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
CGL_MOUSE3.137e-4038.10Cystathionine gamma-lyase OS=Mus musculus GN=Cth P... [more]
METB_HERAU6.988e-4038.83Probable cystathionine gamma-synthase (Fragment) O... [more]
METB_ECOLI6.541e-3838.67Cystathionine gamma-synthase OS=Escherichia coli (... [more]
CYS3_YEAST4.687e-3636.71Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]
CYSA_STRCO1.508e-3439.30Putative cystathionine gamma-lyase OS=Streptomyces... [more]
METB_BACSU7.004e-3234.33Cystathionine gamma-synthase OS=Bacillus subtilis ... [more]
METB_HAEIN5.930e-3134.22Cystathionine gamma-synthase OS=Haemophilus influe... [more]
METC_RHIL37.744e-3134.22Putative cystathionine beta-lyase OS=Rhizobium leg... [more]

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Properties
Property NameValue
Genbank descriptionC34103H03EF PostHarvP1 Citrus clementina cDNA clone C34103H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931320 ID=FC931320; Name=FC931320; organism=Citrus clementina; type=EST; length=725bp
GCCCAAAATGGGAATCACGGCTACGGTGATTGACCCAGCTGATATGGAAG
GTTTGGAGGCAGCACTCAACAATAACAATGTCTCACTATTCTTCACCGAG
TCTCCAACCAATCCATTCCTGAGATGTGTGGATGTCAAACTGGTTTCAGA
TCTTTGCCATAAGAAAGGAGCAATAGTTTGCATAGATGGAACCTTTGCCA
CACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTACTGCAC
TCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGTGCAT
TAGTGGTTCAGAGAAGTTAGTTACACAAATTCGTAATTTGCATCATGTTT
TGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGAGGCATG
AAGACATTGCATCTTCGTGTACAGCAACAAAATTCAACTGCGTTGAGGAT
GGCCAAGATTTTAGAGGCACATCCAAAGGTGAAGCGCGTTCACTATCCAG
GCTTGAAGAGTCATCCTGAGCATCACATTGCCACACAGCAAATGACTGGT
TTTGGTGGGGTAGTTAGTTTTGAGGTTGATGGAGACCTAACGGCCACCAT
AAAATTTATTGATGCCTTGAAAATCCCATATATTGCTCCATCCTTCGGTG
GCTGTGAGAGCATTGTTGATCAGCCAGCTATAATGTCGTATTGGGACCTT
AGCCATCGGAGAAGCTCAGTATGGG
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