FC931322

Overview
NameFC931322
Unique NameFC931322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig309 contig Ccv1_Contig309:20..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  103 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ GK   +++  L M  R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  106 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER KK +  R  R   GL+VRGQ
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  106 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ +KK R+++G+RH  GLRVRGQ
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 48/129 (37.21%), Postives = 88/129 (68.22%), Query Frame = 1
Query:  100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E++ L   V N +++ +PDW LN +++   GK   +V+  LD+++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 46/129 (35.66%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            N+DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L+ L   V   +++ +P+W LN +++   GK   +VS  L++++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 51/129 (39.53%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            ++ F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER KK R+ RG+RH  GL+VRGQ
Sbjct:    2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  103 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LNR++D   G+   +    L M +++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 50/131 (38.17%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   94 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            ++ + F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++  +  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER ++ R+ RG+RH  GL+VRGQ
Sbjct:    1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131          
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R+KKI  +RG+RH  G +VRGQ
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139          
The following BLAST results are available for this feature:
BLAST of FC931322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_PYRKO4.515e-2341.4130S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS18_ENCCU7.701e-2341.7340S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_METTP1.716e-2242.5230S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_THEVO2.926e-2237.2130S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_THEAC2.926e-2235.6630S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_SULSO4.992e-2239.5330S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_METAC1.112e-2137.9830S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_UNCMA1.452e-2138.2830S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_SULAC2.477e-2138.1730S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_NATPD2.477e-2138.7630S ribosomal protein S13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionC34103H05EF PostHarvP1 Citrus clementina cDNA clone C34103H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931322 ID=FC931322; Name=FC931322; organism=Citrus clementina; type=EST; length=721bp
GGCAGTTGGCTTGGCTACTTGCTGCAGCTTCATCTGTCGCCGAAGAGCCT
CTCTTCTCTTCATCATCAATCCTCACAATCGAAAATGTCTCTGGTGGCGA
ACGAAGATTTTCAGCACATTTTGCGTGTGCTGAACACTAACGTCGACGGG
AAGCAGAAGATTATGTTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCG
ACTGGCTAACATCGTTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGG
CCGGTGAACTATCTGCTGCTGAACTTGACAATCTCATGGTCGTTGTTGCA
AATCCCCGACAGTTTAAAATCCCTGATTGGTTCTTGAACAGACAGAAGGA
TTACAAGGATGGAAAGTATTCTCAGGTTGTATCCAATGCACTGGACATGA
AGTTGAGAGATGACTTGGAGCGTCTGAAGAAGATCAGGAACCACCGTGGT
CTCAGGCACTACTGGGGTCTTCGTGTCCGTGGACAACACACCAAGACCAC
CGGCCGTCGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCC
TTTATCAATGTTTTGAACAATCTATACACATGTTCAGGAAGAGTTTGGAC
TTGCTATTGCTGAACATTTGCATCAGACAATATTAGATTTATTTTCTTTT
CTTTGGATGGGTTTTAAGCATTTGAACTGGCTGNCTTTTATCTATTATTT
TCTCTATGGGAATATTTTTAT
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