FC931327

Overview
NameFC931327
Unique NameFC931327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:3..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 66/175 (37.71%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  205 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLL 182          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 67/178 (37.64%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLL 197          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  220 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVL 179          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  220 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVL 179          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            L +LL+    I +     V S QLQ IR  +R    + M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L
Sbjct:   21 LKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVL 182          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            A  AE K     +L +LL++Y  I +    +V +  L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L
Sbjct:    2 AHVAEWKKKEVEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANIL 176          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 49/175 (28.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            A  AE K     +L  +++ Y  I +    NV +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L
Sbjct:    2 AHVAEWKKKEVEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARIL 176          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  223 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVL 178          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            L +LL+    I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L
Sbjct:   21 LKELLKSSNIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVL 182          
BLAST of FC931327 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 708
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVL 182          
The following BLAST results are available for this feature:
BLAST of FC931327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RLA0_LEIIN4.729e-2537.7160S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU4.426e-2337.6460S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_HALSA1.291e-1429.88Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS31.291e-1429.88Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METVO6.406e-1431.48Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_THESM1.864e-1329.71Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THEON2.434e-1328.00Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_NATPD3.179e-1328.22Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_METMP5.423e-1330.25Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM57.082e-1329.01Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionC34103H10EF PostHarvP1 Citrus clementina cDNA clone C34103H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931327 ID=FC931327; Name=FC931327; organism=Citrus clementina; type=EST; length=710bp
ATTCTAGGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGC
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